ENSMUSG00000039001


Mus musculus

Features
Gene ID: ENSMUSG00000039001
  
Biological name :Rps21
  
Synonyms : Mus musculus ribosomal protein S21 (Rps21), transcript variant 5, mRNA. / Q9CQR2 / Rps21
  
Possible biological names infered from orthology : P63220 / ribosomal protein S21
  
Species: Mus musculus
  
Chr. number: 2
Strand: 1
Band: H4
Gene start: 180257377
Gene end: 180258445
  
Corresponding Affymetrix probe sets: 10479362 (MoGene1.0st)   1430288_x_at (Mouse Genome 430 2.0 Array)   1433549_x_at (Mouse Genome 430 2.0 Array)   1433721_x_at (Mouse Genome 430 2.0 Array)   1434358_x_at (Mouse Genome 430 2.0 Array)   1439415_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000058432
NCBI entrez gene - 66481     See in Manteia.
MGI - MGI:1913731
RefSeq - NM_001355521
RefSeq - NM_025587
RefSeq - XM_006500702
RefSeq - NM_001355518
RefSeq - NM_001355520
RefSeq Peptide - NP_001342450
RefSeq Peptide - NP_001342447
RefSeq Peptide - NP_001342449
RefSeq Peptide - NP_001342446
RefSeq Peptide - NP_079863
RefSeq Peptide - NP_001342445
swissprot - Q9CQR2
Ensembl - ENSMUSG00000039001
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rps21ENSDARG00000025850Danio rerio
 RPS21ENSGALG00000005338Gallus gallus
 RPS21ENSG00000171858Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001931  Ribosomal protein S21e
 IPR018279  Ribosomal protein S21e, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0000461 endonucleolytic cleavage to generate mature 3"-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0002181 cytoplasmic translation IEA
 biological_processGO:0006412 translation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005791 rough endoplasmic reticulum IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IEA
 cellular_componentGO:0042788 polysomal ribosome IEA
 molecular_functionGO:0003735 structural constituent of ribosome IBA
 molecular_functionGO:0043022 ribosome binding ISS
 molecular_functionGO:0047485 protein N-terminus binding IEA


Pathways (from Reactome)
Pathway description
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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