ENSDARG00000027803


Danio rerio

Features
Gene ID: ENSDARG00000027803
  
Biological name :sbds
  
Synonyms : sbds / SBDS, ribosome maturation factor
  
Possible biological names infered from orthology : P70122 / Q9Y3A5 / Ribosome maturation protein SBDS
  
Species: Danio rerio
  
Chr. number: 15
Strand: 1
Band:
Gene start: 1891689
Gene end: 1898233
  
Corresponding Affymetrix probe sets: Dr.3090.1.S1_at (Zebrafish Array)   NM_201121_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000125007
Ensembl peptide - ENSDARP00000123843
NCBI entrez gene - 394096     See in Manteia.
RefSeq - NM_201121
RefSeq Peptide - NP_957415
swissprot - F8W5Q9
swissprot - F8W4Y5
ZFIN ID - ZDB-GENE-040426-1116
Ensembl - ENSDARG00000027803
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SBDSENSGALG00000027989Gallus gallus
 SBDSENSG00000126524Homo sapiens
 SbdsENSMUSG00000025337Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002140  Ribosome maturation protein Sdo1/SBDS
 IPR018023  Ribosome maturation protein SBDS, conserved site
 IPR018978  Ribosome maturation protein SBDS, C-terminal
 IPR019783  Ribosome maturation protein SBDS, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002573 myeloid leukocyte differentiation IMP
 biological_processGO:0006364 rRNA processing IBA
 biological_processGO:0030851 granulocyte differentiation IMP
 biological_processGO:0031017 exocrine pancreas development IMP
 biological_processGO:0042254 ribosome biogenesis IMP
 biological_processGO:0042256 mature ribosome assembly IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000033 intermediate cell mass of mesoderm intermediate cell mass of mesoderm neutrophil absent , abnormal
Show

 ZFA:0000140 pancreas pancreas decreased size , abnormal
Show

 ZFA:0000250 opercle opercle shape , abnormal
opercle decreased thickness , abnormal
Show

 ZFA:0001094 whole organism whole organism dead , abnormal
whole organism polysome decreased amount , abnormal
whole organism cytosolic small ribosomal subunit decreased amount , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curved , abnormal
Show

 ZFA:0001249 exocrine pancreas exocrine pancreas morphology , abnormal
exocrine pancreas medial region aplastic , abnormal
exocrine pancreas decreased size , abnormal
Show

 ZFA:0001260 endocrine pancreas endocrine pancreas decreased size , abnormal
Show

 ZFA:0001400 ceratohyal cartilage ceratohyal cartilage morphology , abnormal
Show

 ZFA:0001516 ceratobranchial cartilage ceratobranchial cartilage morphology , abnormal
Show

 ZFA:0005039 anterior lateral mesoderm anterior lateral mesoderm neutrophil absent , abnormal
Show

 ZFA:0009048 granulocyte granulocyte spatial pattern , abnormal
granulocyte position , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr