ENSDARG00000027822


Danio rerio

Features
Gene ID: ENSDARG00000027822
  
Biological name :tmtops2b
  
Synonyms : teleost multiple tissue opsin 2b / tmtops2b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 6118362
Gene end: 6208067
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000030023
swissprot - E7F8D2
ZFIN ID - ZDB-GENE-110411-43
Ensembl - ENSDARG00000027822
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Gallus gallus pinopsin-like (LOC771085), mRNA.ENSGALG00000016802Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tmtops2a / teleost multiple tissue opsin 2aENSDARG0000006151576
tmtopsb / teleost multiple tissue opsin bENSDARG0000003224650
tmtops3b / teleost multiple tissue opsin 3bENSDARG0000009062950
tmtops3a / teleost multiple tissue opsin 3aENSDARG0000003646047
opn3 / opsin 3 / Q9H1Y3* / Q9WUK7*ENSDARG0000005277533
CABZ01063651.1ENSDARG0000010367433
parapinopsinb / parapinopsin bENSDARG0000004467229
parapinopsina / parapinopsin aENSDARG0000011697628
rhol / rhodopsin, like / RHO* / P15409* / P08100* / rhodopsin*ENSDARG0000007066627
opn4a / opsin 4a (melanopsin) / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *ENSDARG0000002209827
rho / P35359 / rhodopsin / P08100*ENSDARG0000000219327
Q8AYN0 / opn1lw2 / opsin 1 (cone pigments), long-wave-sensitive, 2 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...ENSDARG0000004486126
Q9W6A5 / opn1mw1 / opsin 1 (cone pigments), medium-wave-sensitive, 1ENSDARG0000009700826
valopb / vertebrate ancient long opsin bENSDARG0000005418126
Q9W6A8 / opn1sw2 / opsin 1 (cone pigments), short-wave-sensitive 2ENSDARG0000001727426
Q8AYM7 / opn1mw3 / opsin 1 (cone pigments), medium-wave-sensitive, 3ENSDARG0000004427926
valopa / vertebrate ancient long opsin aENSDARG0000002115026
opn4b / opsin 4b / OPN4* / Q9UHM6* / opsin 4*ENSDARG0000005392926
Q9W6A6 / opn1mw4 / opsin 1 (cone pigments), medium-wave-sensitive, 4ENSDARG0000000063825
opn1mw2 / opsin 1 (cone pigments), medium-wave-sensitive, 2ENSDARG0000004428025


Protein motifs (from Interpro)
Interpro ID Name
 IPR000276  G protein-coupled receptor, rhodopsin-like
 IPR001760  Opsin
 IPR002962  Peropsin
 IPR017452  GPCR, rhodopsin-like, 7TM
 IPR027430  Visual pigments (opsins) retinal binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007602 phototransduction IEA
 biological_processGO:0009584 detection of visible light IEA
 biological_processGO:0018298 protein-chromophore linkage IEA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0001750 photoreceptor outer segment IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0004930 G-protein coupled receptor activity IEA
 molecular_functionGO:0008020 G-protein coupled photoreceptor activity IBA
 molecular_functionGO:0009881 photoreceptor activity IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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