Manteia

ENSDARG00000044279

Danio rerio

Features

Gene ID:	ENSDARG00000044279

Biological name :	opn1mw3

Synonyms :	opn1mw3 / opsin 1 (cone pigments), medium-wave-sensitive, 3 / Q8AYM7

Possible biological names infered from orthology :

Species:	Danio rerio

Chr. number:	6
Strand:	1
Band:
Gene start:	41191482
Gene end:	41193419

Corresponding Affymetrix probe sets:

Cross references:	Ensembl peptide - ENSDARP00000001943 NCBI entrez gene - 360152 See in Manteia. RefSeq - NM_182892 RefSeq Peptide - NP_878312 swissprot - A0A0N9NVT6 swissprot - Q8AYM7 ZFIN ID - ZDB-GENE-030728-6 Ensembl - ENSDARG00000044279

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
P28683	ENSGALG00000002848	Gallus gallus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
Q9W6A6 / opn1mw4 / opsin 1 (cone pigments), medium-wave-sensitive, 4	ENSDARG00000000638	92
opn1mw2 / opsin 1 (cone pigments), medium-wave-sensitive, 2	ENSDARG00000044280	88
Q9W6A5 / opn1mw1 / opsin 1 (cone pigments), medium-wave-sensitive, 1	ENSDARG00000097008	85
rho / P35359 / rhodopsin / P08100*	ENSDARG00000002193	67
rhol / rhodopsin, like / RHO* / P15409* / P08100* / rhodopsin*	ENSDARG00000070666	65
Q9W6A8 / opn1sw2 / opsin 1 (cone pigments), short-wave-sensitive 2	ENSDARG00000017274	49
opn1sw1 / opsin 1 (cone pigments), short-wave-sensitive 1 / P51491* / OPN1SW* / P03999* / Short-wave-sensitive opsin 1 * / opsin 1, short wave sensitive*	ENSDARG00000045677	45
Q8AYN0 / opn1lw2 / opsin 1 (cone pigments), long-wave-sensitive, 2 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...	ENSDARG00000044861	42
Q9W6A7 / opn1lw1 / opsin 1 (cone pigments), long-wave-sensitive, 1 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...	ENSDARG00000044862	40
parapinopsina / parapinopsin a	ENSDARG00000116976	36
valopb / vertebrate ancient long opsin b	ENSDARG00000054181	33
parapinopsinb / parapinopsin b	ENSDARG00000044672	33
valopa / vertebrate ancient long opsin a	ENSDARG00000021150	33
tmtops2b / teleost multiple tissue opsin 2b	ENSDARG00000027822	29
tmtops3b / teleost multiple tissue opsin 3b	ENSDARG00000090629	28
tmtopsb / teleost multiple tissue opsin b	ENSDARG00000032246	28
tmtops2a / teleost multiple tissue opsin 2a	ENSDARG00000061515	27
opn3 / opsin 3 / Q9H1Y3* / Q9WUK7*	ENSDARG00000052775	27
parietopsin	ENSDARG00000052056	27
tmtops3a / teleost multiple tissue opsin 3a	ENSDARG00000036460	27

Protein motifs (from Interpro)

Interpro ID	Name
IPR000276	G protein-coupled receptor, rhodopsin-like
IPR000732	Rhodopsin
IPR001760	Opsin
IPR017452	GPCR, rhodopsin-like, 7TM
IPR019477	Rhodopsin, N-terminal
IPR027430	Visual pigments (opsins) retinal binding site

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0007165	signal transduction	IEA
biological_process	GO:0007186	G-protein coupled receptor signaling pathway	IEA
biological_process	GO:0007601	visual perception	IEA
biological_process	GO:0007602	phototransduction	IEA
biological_process	GO:0009584	detection of visible light	IEA
biological_process	GO:0018298	protein-chromophore linkage	IEA
biological_process	GO:0050896	response to stimulus	IEA
cellular_component	GO:0001750	photoreceptor outer segment	IBA
cellular_component	GO:0016020	membrane	IEA
cellular_component	GO:0016021	integral component of membrane	IEA
molecular_function	GO:0004871	obsolete signal transducer activity	IEA
molecular_function	GO:0004930	G-protein coupled receptor activity	IEA
molecular_function	GO:0008020	G-protein coupled photoreceptor activity	IBA
molecular_function	GO:0009881	photoreceptor activity	IEA

Pathways (from Reactome)

Pathway description

No match

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr