Manteia

ENSDARG00000045677

Danio rerio

Features

Gene ID:	ENSDARG00000045677

Biological name :	opn1sw1

Synonyms :	opn1sw1 / opsin 1 (cone pigments), short-wave-sensitive 1

Possible biological names infered from orthology :	OPN1SW / opsin 1, short wave sensitive / P03999 / P51491 / Short-wave-sensitive opsin 1

Species:	Danio rerio

Chr. number:	4
Strand:	-1
Band:
Gene start:	13577665
Gene end:	13580348

Corresponding Affymetrix probe sets:	Dr.8194.1.S1_at (Zebrafish Array) NM_131319_at (Zebrafish Genome Array with custom cdf files)

Cross references:	Ensembl peptide - ENSDARP00000067159 NCBI entrez gene - 30582 See in Manteia. RefSeq - NM_131319 RefSeq Peptide - NP_571394 swissprot - Q6P981 ZFIN ID - ZDB-GENE-991109-25 Ensembl - ENSDARG00000045677

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
OPN1SW	ENSG00000128617	Homo sapiens
Opn1sw	ENSMUSG00000058831	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
Q9W6A6 / opn1mw4 / opsin 1 (cone pigments), medium-wave-sensitive, 4	ENSDARG00000000638	48
Q8AYM7 / opn1mw3 / opsin 1 (cone pigments), medium-wave-sensitive, 3	ENSDARG00000044279	47
opn1mw2 / opsin 1 (cone pigments), medium-wave-sensitive, 2	ENSDARG00000044280	47
rhol / rhodopsin, like / RHO* / P15409* / P08100* / rhodopsin*	ENSDARG00000070666	46
Q9W6A5 / opn1mw1 / opsin 1 (cone pigments), medium-wave-sensitive, 1	ENSDARG00000097008	46
Q9W6A7 / opn1lw1 / opsin 1 (cone pigments), long-wave-sensitive, 1 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...	ENSDARG00000044862	45
Q8AYN0 / opn1lw2 / opsin 1 (cone pigments), long-wave-sensitive, 2 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...	ENSDARG00000044861	45
Q9W6A8 / opn1sw2 / opsin 1 (cone pigments), short-wave-sensitive 2	ENSDARG00000017274	44
rho / P35359 / rhodopsin / P08100*	ENSDARG00000002193	43
valopb / vertebrate ancient long opsin b	ENSDARG00000054181	36
valopa / vertebrate ancient long opsin a	ENSDARG00000021150	36
parapinopsina / parapinopsin a	ENSDARG00000116976	33
parapinopsinb / parapinopsin b	ENSDARG00000044672	32
tmtopsb / teleost multiple tissue opsin b	ENSDARG00000032246	29
tmtops2b / teleost multiple tissue opsin 2b	ENSDARG00000027822	28
tmtops3a / teleost multiple tissue opsin 3a	ENSDARG00000036460	27
tmtops3b / teleost multiple tissue opsin 3b	ENSDARG00000090629	26
tmtops2a / teleost multiple tissue opsin 2a	ENSDARG00000061515	26
opn4b / opsin 4b / OPN4* / Q9UHM6* / opsin 4*	ENSDARG00000053929	25
opn4a / opsin 4a (melanopsin) / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *	ENSDARG00000022098	25

Protein motifs (from Interpro)

Interpro ID	Name
IPR000276	G protein-coupled receptor, rhodopsin-like
IPR001521	Opsin, blue sensitive
IPR001760	Opsin
IPR017452	GPCR, rhodopsin-like, 7TM
IPR027430	Visual pigments (opsins) retinal binding site

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0007165	signal transduction	IEA
biological_process	GO:0007186	G-protein coupled receptor signaling pathway	IEA
biological_process	GO:0007601	visual perception	IEA
biological_process	GO:0007602	phototransduction	IEA
biological_process	GO:0018298	protein-chromophore linkage	IEA
biological_process	GO:0050896	response to stimulus	IEA
cellular_component	GO:0016020	membrane	IEA
cellular_component	GO:0016021	integral component of membrane	IEA
molecular_function	GO:0004871	obsolete signal transducer activity	IEA
molecular_function	GO:0004930	G-protein coupled receptor activity	IEA
molecular_function	GO:0009881	photoreceptor activity	IEA

Pathways (from Reactome)

Pathway description

The retinoid cycle in cones (daylight vision)

G alpha (i) signalling events

Opsins

Phenotype (from MGI, Zfin or HPO)

ID	Phenotype	Definition	Genetic BG
ZFA:0009315	horizontal cell	horizontal cell synapse amount , abnormal	Show

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr