ENSDARG00000044862


Danio rerio

Features
Gene ID: ENSDARG00000044862
  
Biological name :opn1lw1
  
Synonyms : opn1lw1 / opsin 1 (cone pigments), long-wave-sensitive, 1 / Q9W6A7
  
Possible biological names infered from orthology : Medium-wave-sensitive opsin 1 / O35599 / OPN1LW / OPN1MW / OPN1MW2 / OPN1MW3 / opsin 1, long wave sensitive / opsin 1, medium wave sensitive / opsin 1, medium wave sensitive 2 / opsin 1, medium wave sensitive 3 / P04000 / P04001 / P0DN77 / P0DN78
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 25477643
Gene end: 25480037
  
Corresponding Affymetrix probe sets: AFFX-Dr-NM_131175-1_s_at (Zebrafish Array)   Dr.8071.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000065940
NCBI entrez gene - 30413     See in Manteia.
RefSeq - NM_001313715
RefSeq Peptide - NP_001300644
swissprot - A0A0N9N7J4
swissprot - Q9W6A7
ZFIN ID - ZDB-GENE-990604-41
Ensembl - ENSDARG00000044862
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 OPNPENSGALG00000004924Gallus gallus
 OPN1LWENSG00000102076Homo sapiens
 OPN1MWENSG00000268221Homo sapiens
 P0DN77ENSG00000166160Homo sapiens
 P0DN78ENSG00000269433Homo sapiens
 O35599ENSMUSG00000031394Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8AYN0 / opn1lw2 / opsin 1 (cone pigments), long-wave-sensitive, 2 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...ENSDARG0000004486193
opn1sw1 / opsin 1 (cone pigments), short-wave-sensitive 1 / P51491* / OPN1SW* / P03999* / Short-wave-sensitive opsin 1 * / opsin 1, short wave sensitive*ENSDARG0000004567742
Q9W6A6 / opn1mw4 / opsin 1 (cone pigments), medium-wave-sensitive, 4ENSDARG0000000063840
Q9W6A5 / opn1mw1 / opsin 1 (cone pigments), medium-wave-sensitive, 1ENSDARG0000009700839
Q8AYM7 / opn1mw3 / opsin 1 (cone pigments), medium-wave-sensitive, 3ENSDARG0000004427939
rhol / rhodopsin, like / RHO* / P15409* / P08100* / rhodopsin*ENSDARG0000007066639
opn1mw2 / opsin 1 (cone pigments), medium-wave-sensitive, 2ENSDARG0000004428038
Q9W6A8 / opn1sw2 / opsin 1 (cone pigments), short-wave-sensitive 2ENSDARG0000001727438
rho / P35359 / rhodopsin / P08100*ENSDARG0000000219337
valopa / vertebrate ancient long opsin aENSDARG0000002115035
valopb / vertebrate ancient long opsin bENSDARG0000005418134
parapinopsina / parapinopsin aENSDARG0000011697634
parapinopsinb / parapinopsin bENSDARG0000004467232
tmtopsb / teleost multiple tissue opsin bENSDARG0000003224628
parietopsinENSDARG0000005205627
opn4a / opsin 4a (melanopsin) / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *ENSDARG0000002209827
tmtops2b / teleost multiple tissue opsin 2bENSDARG0000002782227
tmtops3a / teleost multiple tissue opsin 3aENSDARG0000003646027
tmtops3b / teleost multiple tissue opsin 3bENSDARG0000009062927
opn4b / opsin 4b / OPN4* / Q9UHM6* / opsin 4*ENSDARG0000005392926


Protein motifs (from Interpro)
Interpro ID Name
 IPR000276  G protein-coupled receptor, rhodopsin-like
 IPR000378  Opsin red/green sensitive
 IPR001760  Opsin
 IPR017452  GPCR, rhodopsin-like, 7TM
 IPR027430  Visual pigments (opsins) retinal binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IEA
 biological_processGO:0007601 visual perception NAS
 biological_processGO:0007602 phototransduction IEA
 biological_processGO:0009416 response to light stimulus IDA
 biological_processGO:0009584 detection of visible light IEA
 biological_processGO:0009585 red, far-red light phototransduction IEA
 biological_processGO:0009648 photoperiodism IDA
 biological_processGO:0018298 protein-chromophore linkage IEA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0001750 photoreceptor outer segment IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0004930 G-protein coupled receptor activity IEA
 molecular_functionGO:0008020 G-protein coupled photoreceptor activity IBA
 molecular_functionGO:0009881 photoreceptor activity IEA
 molecular_functionGO:0009883 red or far-red light photoreceptor activity NAS


Pathways (from Reactome)
Pathway description
The retinoid cycle in cones (daylight vision)
G alpha (i) signalling events
Opsins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000002193 rho / P35359 / rhodopsin / P08100*  / reaction
 ENSDARG00000044861 Q8AYN0 / opn1lw2 / opsin 1 (cone pigments), long-wave-sensitive, 2 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...  / reaction
 ENSDARG00000104372 gnb1b / guanine nucleotide binding protein (G protein), beta polypeptide 1b / GNB1* / P62874* / P62873* / G protein subunit beta 1* / guanine nucleotide binding protein (G protein), beta 1*  / reaction / complex
 ENSDARG00000044199 gnat1 / guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1 / P20612* / P11488* / G protein subunit alpha transducin 1* / guanine nucleotide binding pro...  / reaction / complex
 ENSDARG00000042529 gnat2 / guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2 / P50149* / P19087* / G protein subunit alpha transducin 2* / guanine nucleotide binding pro...  / complex / reaction
 ENSDARG00000056831 gng2 / guanine nucleotide binding protein (G protein), gamma 2 / P59768* / P63213* / G protein subunit gamma 2*  / complex / reaction
 ENSDARG00000090454 gnb1a / Q6PH57 / guanine nucleotide binding protein (G protein), beta polypeptide 1a / GNB1* / P62873* / G protein subunit beta 1*  / reaction / complex
 ENSDARG00000044862 Q9W6A7 / opn1lw1 / opsin 1 (cone pigments), long-wave-sensitive, 1 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...  / reaction
 ENSDARG00000070666 rhol / rhodopsin, like / RHO* / P15409* / P08100* / rhodopsin*  / reaction






 

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