Manteia

ENSDARG00000052056

Danio rerio

Features

Gene ID:	ENSDARG00000052056

Biological name :	parietopsin

Synonyms :	parietopsin

Possible biological names infered from orthology :

Species:	Danio rerio

Chr. number:	25
Strand:	-1
Band:
Gene start:	18909607
Gene end:	18920440

Corresponding Affymetrix probe sets:

Cross references:	Ensembl peptide - ENSDARP00000068301 Ensembl peptide - ENSDARP00000129839 NCBI entrez gene - 796632 See in Manteia. RefSeq - NM_001328157 RefSeq Peptide - NP_001315086 swissprot - F1QYR6 swissprot - X1WHX4 ZFIN ID - ZDB-GENE-101129-2 Ensembl - ENSDARG00000052056

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name

Species

No match

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
parapinopsina / parapinopsin a	ENSDARG00000116976	35
parapinopsinb / parapinopsin b	ENSDARG00000044672	35
valopb / vertebrate ancient long opsin b	ENSDARG00000054181	33
valopa / vertebrate ancient long opsin a	ENSDARG00000021150	33
Q8AYN0 / opn1lw2 / opsin 1 (cone pigments), long-wave-sensitive, 2 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...	ENSDARG00000044861	30
rho / P35359 / rhodopsin / P08100*	ENSDARG00000002193	29
Q9W6A6 / opn1mw4 / opsin 1 (cone pigments), medium-wave-sensitive, 4	ENSDARG00000000638	29
Q9W6A7 / opn1lw1 / opsin 1 (cone pigments), long-wave-sensitive, 1 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...	ENSDARG00000044862	29
rhol / rhodopsin, like / RHO* / P15409* / P08100* / rhodopsin*	ENSDARG00000070666	29
opn3 / opsin 3 / Q9H1Y3* / Q9WUK7*	ENSDARG00000052775	29
opn1mw2 / opsin 1 (cone pigments), medium-wave-sensitive, 2	ENSDARG00000044280	28
Q8AYM7 / opn1mw3 / opsin 1 (cone pigments), medium-wave-sensitive, 3	ENSDARG00000044279	28
Q9W6A8 / opn1sw2 / opsin 1 (cone pigments), short-wave-sensitive 2	ENSDARG00000017274	28
Q9W6A5 / opn1mw1 / opsin 1 (cone pigments), medium-wave-sensitive, 1	ENSDARG00000097008	28
tmtops3a / teleost multiple tissue opsin 3a	ENSDARG00000036460	28
tmtops3b / teleost multiple tissue opsin 3b	ENSDARG00000090629	27
tmtops2b / teleost multiple tissue opsin 2b	ENSDARG00000027822	27
opn4.1 / Q1JPS6 / opsin 4.1 / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *	ENSDARG00000007553	27
tmtopsb / teleost multiple tissue opsin b	ENSDARG00000032246	27
opn4xa / opsin 4xa	ENSDARG00000079129	26

Protein motifs (from Interpro)

Interpro ID	Name
IPR000276	G protein-coupled receptor, rhodopsin-like
IPR008365	Prostanoid receptor
IPR017452	GPCR, rhodopsin-like, 7TM
IPR027430	Visual pigments (opsins) retinal binding site

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0007165	signal transduction	IEA
biological_process	GO:0007186	G-protein coupled receptor signaling pathway	IEA
biological_process	GO:0009584	detection of visible light	IEA
biological_process	GO:0018298	protein-chromophore linkage	IEA
biological_process	GO:0050896	response to stimulus	IEA
cellular_component	GO:0001750	photoreceptor outer segment	IBA
cellular_component	GO:0016020	membrane	IEA
cellular_component	GO:0016021	integral component of membrane	IEA
molecular_function	GO:0004871	obsolete signal transducer activity	IEA
molecular_function	GO:0004930	G-protein coupled receptor activity	IEA
molecular_function	GO:0008020	G-protein coupled photoreceptor activity	IBA
molecular_function	GO:0009881	photoreceptor activity	IEA

Pathways (from Reactome)

Pathway description

No match

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

1 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr