Manteia

ENSDARG00000017274

Danio rerio

Features

Gene ID:	ENSDARG00000017274

Biological name :	opn1sw2

Synonyms :	opn1sw2 / opsin 1 (cone pigments), short-wave-sensitive 2 / Q9W6A8

Possible biological names infered from orthology :

Species:	Danio rerio

Chr. number:	11
Strand:	1
Band:
Gene start:	25459697
Gene end:	25475403

Corresponding Affymetrix probe sets:	Dr.8097.1.S1_at (Zebrafish Array)

Cross references:	Ensembl peptide - ENSDARP00000019477 Ensembl peptide - ENSDARP00000137216 NCBI entrez gene - 30435 See in Manteia. RefSeq - NM_131192 RefSeq Peptide - NP_571267 swissprot - A8E5J4 swissprot - A0A0R4IMF0 swissprot - Q9W6A8 ZFIN ID - ZDB-GENE-990604-40 Ensembl - ENSDARG00000017274

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name

Species

No match

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
opn1mw2 / opsin 1 (cone pigments), medium-wave-sensitive, 2	ENSDARG00000044280	49
Q9W6A5 / opn1mw1 / opsin 1 (cone pigments), medium-wave-sensitive, 1	ENSDARG00000097008	48
Q9W6A6 / opn1mw4 / opsin 1 (cone pigments), medium-wave-sensitive, 4	ENSDARG00000000638	48
Q8AYM7 / opn1mw3 / opsin 1 (cone pigments), medium-wave-sensitive, 3	ENSDARG00000044279	48
rhol / rhodopsin, like / RHO* / P15409* / P08100* / rhodopsin*	ENSDARG00000070666	47
rho / P35359 / rhodopsin / P08100*	ENSDARG00000002193	46
opn1sw1 / opsin 1 (cone pigments), short-wave-sensitive 1 / P51491* / OPN1SW* / P03999* / Short-wave-sensitive opsin 1 * / opsin 1, short wave sensitive*	ENSDARG00000045677	42
Q9W6A7 / opn1lw1 / opsin 1 (cone pigments), long-wave-sensitive, 1 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...	ENSDARG00000044862	39
Q8AYN0 / opn1lw2 / opsin 1 (cone pigments), long-wave-sensitive, 2 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...	ENSDARG00000044861	38
parapinopsina / parapinopsin a	ENSDARG00000116976	34
valopa / vertebrate ancient long opsin a	ENSDARG00000021150	34
parapinopsinb / parapinopsin b	ENSDARG00000044672	34
valopb / vertebrate ancient long opsin b	ENSDARG00000054181	32
tmtopsb / teleost multiple tissue opsin b	ENSDARG00000032246	29
tmtops3b / teleost multiple tissue opsin 3b	ENSDARG00000090629	28
tmtops2b / teleost multiple tissue opsin 2b	ENSDARG00000027822	28
tmtops3a / teleost multiple tissue opsin 3a	ENSDARG00000036460	27
parietopsin	ENSDARG00000052056	27
opn3 / opsin 3 / Q9H1Y3* / Q9WUK7*	ENSDARG00000052775	26
tmtops2a / teleost multiple tissue opsin 2a	ENSDARG00000061515	26

Protein motifs (from Interpro)

Interpro ID	Name
IPR000276	G protein-coupled receptor, rhodopsin-like
IPR001521	Opsin, blue sensitive
IPR001760	Opsin
IPR017452	GPCR, rhodopsin-like, 7TM
IPR027430	Visual pigments (opsins) retinal binding site

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0007165	signal transduction	IEA
biological_process	GO:0007186	G-protein coupled receptor signaling pathway	IEA
biological_process	GO:0007601	visual perception	IEA
biological_process	GO:0007602	phototransduction	IEA
biological_process	GO:0009584	detection of visible light	IEA
biological_process	GO:0009785	blue light signaling pathway	IEA
biological_process	GO:0018298	protein-chromophore linkage	IEA
biological_process	GO:0050896	response to stimulus	IEA
cellular_component	GO:0001750	photoreceptor outer segment	IDA
cellular_component	GO:0016020	membrane	IEA
cellular_component	GO:0016021	integral component of membrane	IEA
molecular_function	GO:0004871	obsolete signal transducer activity	IEA
molecular_function	GO:0004930	G-protein coupled receptor activity	IEA
molecular_function	GO:0008020	G-protein coupled photoreceptor activity	IBA
molecular_function	GO:0009881	photoreceptor activity	IEA
molecular_function	GO:0009882	blue light photoreceptor activity	NAS

Pathways (from Reactome)

Pathway description

No match

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr