ENSDARG00000052775


Danio rerio

Features
Gene ID: ENSDARG00000052775
  
Biological name :opn3
  
Synonyms : opn3 / opsin 3
  
Possible biological names infered from orthology : Q9H1Y3 / Q9WUK7
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 42245221
Gene end: 42265585
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000069184
NCBI entrez gene - 561815     See in Manteia.
RefSeq - NM_001111164
RefSeq Peptide - NP_001104634
swissprot - A9NJI7
ZFIN ID - ZDB-GENE-080227-16
Ensembl - ENSDARG00000052775
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 OPN3ENSGALG00000010762Gallus gallus
 OPN3ENSG00000054277Homo sapiens
 Opn3ENSMUSG00000026525Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tmtops2b / teleost multiple tissue opsin 2bENSDARG0000002782233
tmtops2a / teleost multiple tissue opsin 2aENSDARG0000006151531
tmtops3a / teleost multiple tissue opsin 3aENSDARG0000003646031
tmtops3b / teleost multiple tissue opsin 3bENSDARG0000009062930
tmtopsb / teleost multiple tissue opsin bENSDARG0000003224629
opn4xa / opsin 4xaENSDARG0000007912926
parapinopsina / parapinopsin aENSDARG0000011697626
valopa / vertebrate ancient long opsin aENSDARG0000002115026
valopb / vertebrate ancient long opsin bENSDARG0000005418126
opn4.1 / Q1JPS6 / opsin 4.1 / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *ENSDARG0000000755325
opn4a / opsin 4a (melanopsin) / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *ENSDARG0000002209825
parietopsinENSDARG0000005205625
Q9W6A6 / opn1mw4 / opsin 1 (cone pigments), medium-wave-sensitive, 4ENSDARG0000000063825
Q9W6A8 / opn1sw2 / opsin 1 (cone pigments), short-wave-sensitive 2ENSDARG0000001727424
opn4xb / opsin 4xbENSDARG0000010325924
rho / P35359 / rhodopsin / P08100*ENSDARG0000000219324
Q8AYM7 / opn1mw3 / opsin 1 (cone pigments), medium-wave-sensitive, 3ENSDARG0000004427924
parapinopsinb / parapinopsin bENSDARG0000004467224
opn6b / opsin 6, group member bENSDARG0000009805124
opn4b / opsin 4b / OPN4* / Q9UHM6* / opsin 4*ENSDARG0000005392924


Protein motifs (from Interpro)
Interpro ID Name
 IPR000276  G protein-coupled receptor, rhodopsin-like
 IPR001760  Opsin
 IPR017452  GPCR, rhodopsin-like, 7TM
 IPR027430  Visual pigments (opsins) retinal binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007602 phototransduction IEA
 biological_processGO:0009584 detection of visible light IEA
 biological_processGO:0018298 protein-chromophore linkage IEA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0001750 photoreceptor outer segment IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0004930 G-protein coupled receptor activity IEA
 molecular_functionGO:0008020 G-protein coupled photoreceptor activity IBA
 molecular_functionGO:0009881 photoreceptor activity IEA
 molecular_functionGO:0016918 retinal binding IDA


Pathways (from Reactome)
Pathway description
G alpha (i) signalling events
Opsins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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