ENSDARG00000098051


Danio rerio

Features
Gene ID: ENSDARG00000098051
  
Biological name :opn6b
  
Synonyms : opn6b / opsin 6, group member b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 28760586
Gene end: 28770800
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000128845
NCBI entrez gene - 557053     See in Manteia.
swissprot - X1WF41
ZFIN ID - ZDB-GENE-030616-402
Ensembl - ENSDARG00000098051
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
opn6a / opsin 6, group member aENSDARG0000010243049
opn5 / opsin 5 / Q6U736* / Q6VZZ7*ENSDARG0000007011025
opn9 / opsin 9ENSDARG0000010423124
opn7b / opsin 7, group member bENSDARG0000011658424
opn7a / opsin 7, group member aENSDARG0000002420823
rrh / retinal pigment epithelium-derived rhodopsin homolog / O14718* / O35214*ENSDARG0000003953423
opn7d / opsin 7, group member dENSDARG0000006812423
opn3 / opsin 3 / Q9H1Y3* / Q9WUK7*ENSDARG0000005277523
opn8c / opsin 8, group member cENSDARG0000004347923
opn7c / opsin 7, group member cENSDARG0000003086722
opn8b / opsin 8, group member bENSDARG0000007904521
opn4xa / opsin 4xaENSDARG0000007912921
parietopsinENSDARG0000005205621
tmtops2b / teleost multiple tissue opsin 2bENSDARG0000002782221
tmtops3a / teleost multiple tissue opsin 3aENSDARG0000003646020
opn4xb / opsin 4xbENSDARG0000010325920
tmtops3b / teleost multiple tissue opsin 3bENSDARG0000009062920
tmtops2a / teleost multiple tissue opsin 2aENSDARG0000006151520
valopa / vertebrate ancient long opsin aENSDARG0000002115019
rhol / rhodopsin, like / RHO* / P15409* / P08100* / rhodopsin*ENSDARG0000007066619


Protein motifs (from Interpro)
Interpro ID Name
 IPR000276  G protein-coupled receptor, rhodopsin-like
 IPR017452  GPCR, rhodopsin-like, 7TM
 IPR027430  Visual pigments (opsins) retinal binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IEA
 biological_processGO:0007602 phototransduction IDA
 biological_processGO:0009584 detection of visible light IEA
 biological_processGO:0018298 protein-chromophore linkage IEA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0001750 photoreceptor outer segment IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0004930 G-protein coupled receptor activity IEA
 molecular_functionGO:0008020 G-protein coupled photoreceptor activity IBA
 molecular_functionGO:0009881 photoreceptor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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