ENSDARG00000068124


Danio rerio

Features
Gene ID: ENSDARG00000068124
  
Biological name :opn7d
  
Synonyms : opn7d / opsin 7, group member d
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 49478026
Gene end: 49499457
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000089098
Ensembl peptide - ENSDARP00000115929
NCBI entrez gene - 100000387     See in Manteia.
RefSeq - NM_001316946
RefSeq Peptide - NP_001303875
swissprot - F1QAS9
swissprot - E9QFB2
ZFIN ID - ZDB-GENE-081105-91
Ensembl - ENSDARG00000068124
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
opn7c / opsin 7, group member cENSDARG0000003086773
opn7b / opsin 7, group member bENSDARG0000011658463
opn7a / opsin 7, group member aENSDARG0000002420849
opn5 / opsin 5 / Q6U736* / Q6VZZ7*ENSDARG0000007011030
opn9 / opsin 9ENSDARG0000010423127
opn8a / opsin 8, group member aENSDARG0000008618626
opn8b / opsin 8, group member bENSDARG0000007904526
opn8c / opsin 8, group member cENSDARG0000004347926
opn4.1 / Q1JPS6 / opsin 4.1 / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *ENSDARG0000000755324
opn4xa / opsin 4xaENSDARG0000007912923
opn6b / opsin 6, group member bENSDARG0000009805123
opn6a / opsin 6, group member aENSDARG0000010243023
opn4xb / opsin 4xbENSDARG0000010325922
Q9W6A6 / opn1mw4 / opsin 1 (cone pigments), medium-wave-sensitive, 4ENSDARG0000000063821
rrh / retinal pigment epithelium-derived rhodopsin homolog / O14718* / O35214*ENSDARG0000003953421
tmtops3b / teleost multiple tissue opsin 3bENSDARG0000009062921
tmtops2b / teleost multiple tissue opsin 2bENSDARG0000002782221
tmtops3a / teleost multiple tissue opsin 3aENSDARG0000003646021
opn4b / opsin 4b / OPN4* / Q9UHM6* / opsin 4*ENSDARG0000005392921
opn4a / opsin 4a (melanopsin) / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *ENSDARG0000002209821


Protein motifs (from Interpro)
Interpro ID Name
 IPR000276  G protein-coupled receptor, rhodopsin-like
 IPR002962  Peropsin
 IPR017452  GPCR, rhodopsin-like, 7TM
 IPR027430  Visual pigments (opsins) retinal binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007602 phototransduction IDA
 biological_processGO:0009584 detection of visible light IEA
 biological_processGO:0018298 protein-chromophore linkage IEA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0001750 photoreceptor outer segment IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0004930 G-protein coupled receptor activity IEA
 molecular_functionGO:0008020 G-protein coupled photoreceptor activity IBA
 molecular_functionGO:0009881 photoreceptor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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