ENSDARG00000116584


Danio rerio

Features
Gene ID: ENSDARG00000116584
  
Biological name :opn7b
  
Synonyms : opn7b / opsin 7, group member b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 3777655
Gene end: 3802071
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000146339
NCBI entrez gene - 100332167     See in Manteia.
RefSeq - NM_001316949
RefSeq Peptide - NP_001303878
swissprot - E7FEE5
ZFIN ID - ZDB-GENE-130530-850
Ensembl - ENSDARG00000116584
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
opn7d / opsin 7, group member dENSDARG0000006812464
opn7c / opsin 7, group member cENSDARG0000003086760
opn7a / opsin 7, group member aENSDARG0000002420848
opn5 / opsin 5 / Q6U736* / Q6VZZ7*ENSDARG0000007011031
opn9 / opsin 9ENSDARG0000010423128
opn8a / opsin 8, group member aENSDARG0000008618626
opn8c / opsin 8, group member cENSDARG0000004347925
opn8b / opsin 8, group member bENSDARG0000007904525
opn6a / opsin 6, group member aENSDARG0000010243024
opn6b / opsin 6, group member bENSDARG0000009805123
opn4xb / opsin 4xbENSDARG0000010325922
tmtopsb / teleost multiple tissue opsin bENSDARG0000003224622
tmtops3a / teleost multiple tissue opsin 3aENSDARG0000003646022
opn3 / opsin 3 / Q9H1Y3* / Q9WUK7*ENSDARG0000005277522
valopa / vertebrate ancient long opsin aENSDARG0000002115021
tmtops3b / teleost multiple tissue opsin 3bENSDARG0000009062921
Q9W6A7 / opn1lw1 / opsin 1 (cone pigments), long-wave-sensitive, 1 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...ENSDARG0000004486221
rrh / retinal pigment epithelium-derived rhodopsin homolog / O14718* / O35214*ENSDARG0000003953421
tmtops2b / teleost multiple tissue opsin 2bENSDARG0000002782221
opn4xa / opsin 4xaENSDARG0000007912921


Protein motifs (from Interpro)
Interpro ID Name
 IPR000276  G protein-coupled receptor, rhodopsin-like
 IPR002962  Peropsin
 IPR017452  GPCR, rhodopsin-like, 7TM
 IPR027430  Visual pigments (opsins) retinal binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007602 phototransduction IDA
 biological_processGO:0009584 detection of visible light IEA
 biological_processGO:0018298 protein-chromophore linkage IEA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0001750 photoreceptor outer segment IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0004930 G-protein coupled receptor activity IEA
 molecular_functionGO:0008020 G-protein coupled photoreceptor activity IBA
 molecular_functionGO:0009881 photoreceptor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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