ENSDARG00000039534


Danio rerio

Features
Gene ID: ENSDARG00000039534
  
Biological name :rrh
  
Synonyms : retinal pigment epithelium-derived rhodopsin homolog / rrh
  
Possible biological names infered from orthology : O14718 / O35214
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 12528043
Gene end: 12540539
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000057760
NCBI entrez gene - 447916     See in Manteia.
RefSeq - NM_001004654
RefSeq Peptide - NP_001004654
swissprot - F1Q8F2
ZFIN ID - ZDB-GENE-040912-94
Ensembl - ENSDARG00000039534
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RRHENSGALG00000012181Gallus gallus
 RRHENSG00000180245Homo sapiens
 RrhENSMUSG00000028012Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
opn4b / opsin 4b / OPN4* / Q9UHM6* / opsin 4*ENSDARG0000005392925
tmtops3b / teleost multiple tissue opsin 3bENSDARG0000009062925
opn6a / opsin 6, group member aENSDARG0000010243025
opn5 / opsin 5 / Q6U736* / Q6VZZ7*ENSDARG0000007011025
tmtops3a / teleost multiple tissue opsin 3aENSDARG0000003646025
opn4a / opsin 4a (melanopsin) / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *ENSDARG0000002209825
valopa / vertebrate ancient long opsin aENSDARG0000002115024
opn4xb / opsin 4xbENSDARG0000010325924
tmtopsb / teleost multiple tissue opsin bENSDARG0000003224624
tmtops2a / teleost multiple tissue opsin 2aENSDARG0000006151524
opn6b / opsin 6, group member bENSDARG0000009805124
tmtops2b / teleost multiple tissue opsin 2bENSDARG0000002782223
opn8b / opsin 8, group member bENSDARG0000007904523
opn3 / opsin 3 / Q9H1Y3* / Q9WUK7*ENSDARG0000005277523
opn7a / opsin 7, group member aENSDARG0000002420823
opn9 / opsin 9ENSDARG0000010423123
opn4.1 / Q1JPS6 / opsin 4.1 / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *ENSDARG0000000755323
opn4xa / opsin 4xaENSDARG0000007912922
opn7b / opsin 7, group member bENSDARG0000011658422
Q9W6A8 / opn1sw2 / opsin 1 (cone pigments), short-wave-sensitive 2ENSDARG0000001727422


Protein motifs (from Interpro)
Interpro ID Name
 IPR000276  G protein-coupled receptor, rhodopsin-like
 IPR002962  Peropsin
 IPR017452  GPCR, rhodopsin-like, 7TM
 IPR027430  Visual pigments (opsins) retinal binding site
 IPR032972  Visual pigment-like receptor peropsin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0009584 detection of visible light IEA
 biological_processGO:0018298 protein-chromophore linkage IEA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0001750 photoreceptor outer segment IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0004930 G-protein coupled receptor activity IEA
 molecular_functionGO:0008020 G-protein coupled photoreceptor activity IBA
 molecular_functionGO:0009881 photoreceptor activity IEA


Pathways (from Reactome)
Pathway description
G alpha (i) signalling events
Opsins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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