ENSMUSG00000028012


Mus musculus

Features
Gene ID: ENSMUSG00000028012
  
Biological name :Rrh
  
Synonyms : O35214 / retinal pigment epithelium derived rhodopsin homolog / Rrh
  
Possible biological names infered from orthology : O14718
  
Species: Mus musculus
  
Chr. number: 3
Strand: -1
Band: G3
Gene start: 129804408
Gene end: 129822587
  
Corresponding Affymetrix probe sets: 10502135 (MoGene1.0st)   1450280_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000143054
Ensembl peptide - ENSMUSP00000143245
Ensembl peptide - ENSMUSP00000143093
Ensembl peptide - ENSMUSP00000029648
Ensembl peptide - ENSMUSP00000132360
NCBI entrez gene - 20132     See in Manteia.
MGI - MGI:1097709
RefSeq - NM_009102
RefSeq - XM_017319507
RefSeq Peptide - NP_033128
swissprot - A0A0G2JFN6
swissprot - O35214
swissprot - Q543W9
swissprot - Q80XL3
swissprot - A0A0G2JF76
Ensembl - ENSMUSG00000028012
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rrhENSDARG00000039534Danio rerio
 RRHENSGALG00000012181Gallus gallus
 RRHENSG00000180245Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Opn4 / Q9QXZ9 / Melanopsin / Q9UHM6* / opsin 4*ENSMUSG0000002179929
Opn3 / Q9WUK7 / Opsin-3 / Q9H1Y3*ENSMUSG0000002652528
Opn5 / Q6VZZ7 / Opsin-5 / Q6U736*ENSMUSG0000004397226
Rho / P15409 / Rhodopsin / P08100*ENSMUSG0000003032424
Opn1sw / P51491 / Short-wave-sensitive opsin 1 / P03999* / opsin 1, short wave sensitive*ENSMUSG0000005883123
Opn1mw / O35599 / Medium-wave-sensitive opsin 1 / P0DN78* / OPN1LW* / P04000* / P04001* / P0DN77* / OPN1MW2* / OPN1MW3* / opsin 1, long wave sensitive* / opsin 1, medium wave sensitive* / ...ENSMUSG0000003139423


Protein motifs (from Interpro)
Interpro ID Name
 IPR000276  G protein-coupled receptor, rhodopsin-like
 IPR002962  Peropsin
 IPR017452  GPCR, rhodopsin-like, 7TM
 IPR027430  Visual pigments (opsins) retinal binding site
 IPR032972  Visual pigment-like receptor peropsin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007602 phototransduction IEA
 biological_processGO:0009584 detection of visible light IEA
 biological_processGO:0018298 protein-chromophore linkage IEA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0001750 photoreceptor outer segment IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0004930 G-protein coupled receptor activity IEA
 molecular_functionGO:0008020 G-protein coupled photoreceptor activity IBA
 molecular_functionGO:0009881 photoreceptor activity IEA


Pathways (from Reactome)
Pathway description
G alpha (i) signalling events
Opsins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr