ENSDARG00000024208


Danio rerio

Features
Gene ID: ENSDARG00000024208
  
Biological name :opn7a
  
Synonyms : opn7a / opsin 7, group member a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 6241855
Gene end: 6278817
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000031910
NCBI entrez gene - 570397     See in Manteia.
RefSeq - NM_001316948
RefSeq Peptide - NP_001303877
swissprot - F1RAF0
swissprot - A0A0N9NY15
ZFIN ID - ZDB-GENE-140106-15
Ensembl - ENSDARG00000024208
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 OPN5L1ENSGALG00000015153Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
opn7c / opsin 7, group member cENSDARG0000003086743
opn7d / opsin 7, group member dENSDARG0000006812443
opn7b / opsin 7, group member bENSDARG0000011658442
opn5 / opsin 5 / Q6U736* / Q6VZZ7*ENSDARG0000007011025
opn8b / opsin 8, group member bENSDARG0000007904524
opn9 / opsin 9ENSDARG0000010423124
opn4b / opsin 4b / OPN4* / Q9UHM6* / opsin 4*ENSDARG0000005392924
opn4a / opsin 4a (melanopsin) / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *ENSDARG0000002209823
opn8a / opsin 8, group member aENSDARG0000008618622
opn4.1 / Q1JPS6 / opsin 4.1 / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *ENSDARG0000000755322
opn8c / opsin 8, group member cENSDARG0000004347921
opn4xa / opsin 4xaENSDARG0000007912921
opn6b / opsin 6, group member bENSDARG0000009805120
tmtops2b / teleost multiple tissue opsin 2bENSDARG0000002782220
opn4xb / opsin 4xbENSDARG0000010325920
Q8AYN0 / opn1lw2 / opsin 1 (cone pigments), long-wave-sensitive, 2 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...ENSDARG0000004486120
opn6a / opsin 6, group member aENSDARG0000010243020
opn3 / opsin 3 / Q9H1Y3* / Q9WUK7*ENSDARG0000005277520
parapinopsinb / parapinopsin bENSDARG0000004467220
rhol / rhodopsin, like / RHO* / P15409* / P08100* / rhodopsin*ENSDARG0000007066619


Protein motifs (from Interpro)
Interpro ID Name
 IPR000276  G protein-coupled receptor, rhodopsin-like
 IPR002962  Peropsin
 IPR017452  GPCR, rhodopsin-like, 7TM
 IPR027430  Visual pigments (opsins) retinal binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007602 phototransduction IDA
 biological_processGO:0009584 detection of visible light IEA
 biological_processGO:0018298 protein-chromophore linkage IEA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0001750 photoreceptor outer segment IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0004930 G-protein coupled receptor activity IEA
 molecular_functionGO:0008020 G-protein coupled photoreceptor activity IBA
 molecular_functionGO:0009881 photoreceptor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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