ENSDARG00000070110


Danio rerio

Features
Gene ID: ENSDARG00000070110
  
Biological name :opn5
  
Synonyms : opn5 / opsin 5
  
Possible biological names infered from orthology : Q6U736 / Q6VZZ7
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 35998073
Gene end: 36036696
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000021281
Ensembl peptide - ENSDARP00000122964
NCBI entrez gene - 564181     See in Manteia.
RefSeq - NM_001200046
RefSeq Peptide - NP_001186975
swissprot - Q5RIV6
ZFIN ID - ZDB-GENE-041001-179
Ensembl - ENSDARG00000070110
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 OPN5ENSGALG00000016725Gallus gallus
 OPN5ENSG00000124818Homo sapiens
 Opn5ENSMUSG00000043972Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
opn9 / opsin 9ENSDARG0000010423139
opn7b / opsin 7, group member bENSDARG0000011658435
opn7d / opsin 7, group member dENSDARG0000006812434
opn7a / opsin 7, group member aENSDARG0000002420833
opn8b / opsin 8, group member bENSDARG0000007904532
opn7c / opsin 7, group member cENSDARG0000003086731
opn8a / opsin 8, group member aENSDARG0000008618630
opn8c / opsin 8, group member cENSDARG0000004347930
opn6a / opsin 6, group member aENSDARG0000010243028
opn6b / opsin 6, group member bENSDARG0000009805128
rrh / retinal pigment epithelium-derived rhodopsin homolog / O14718* / O35214*ENSDARG0000003953427
opn4xb / opsin 4xbENSDARG0000010325926
opn4a / opsin 4a (melanopsin) / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *ENSDARG0000002209826
opn4b / opsin 4b / OPN4* / Q9UHM6* / opsin 4*ENSDARG0000005392926
tmtops3a / teleost multiple tissue opsin 3aENSDARG0000003646026
opn4xa / opsin 4xaENSDARG0000007912925
tmtops2a / teleost multiple tissue opsin 2aENSDARG0000006151525
valopa / vertebrate ancient long opsin aENSDARG0000002115025
opn4.1 / Q1JPS6 / opsin 4.1 / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *ENSDARG0000000755325
tmtops2b / teleost multiple tissue opsin 2bENSDARG0000002782225


Protein motifs (from Interpro)
Interpro ID Name
 IPR000276  G protein-coupled receptor, rhodopsin-like
 IPR017452  GPCR, rhodopsin-like, 7TM
 IPR027430  Visual pigments (opsins) retinal binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IEA
 biological_processGO:0016038 absorption of visible light IDA
 biological_processGO:0018298 protein-chromophore linkage IEA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0004930 G-protein coupled receptor activity IEA
 molecular_functionGO:0005502 11-cis retinal binding IDA
 molecular_functionGO:0005503 all-trans retinal binding IDA
 molecular_functionGO:0009881 photoreceptor activity IEA


Pathways (from Reactome)
Pathway description
G alpha (i) signalling events
Opsins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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