ENSDARG00000103259


Danio rerio

Features
Gene ID: ENSDARG00000103259
  
Biological name :opn4xb
  
Synonyms : opn4xb / opsin 4xb
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 7853463
Gene end: 7897420
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000134739
Ensembl peptide - ENSDARP00000138334
NCBI entrez gene - 563080     See in Manteia.
RefSeq - NM_001258223
RefSeq Peptide - NP_001245152
swissprot - A0A0R4ISV7
swissprot - A0A0R4IK89
ZFIN ID - ZDB-GENE-070705-526
Ensembl - ENSDARG00000103259
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 OPN4-1ENSGALG00000041662Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
opn4xa / opsin 4xaENSDARG0000007912958
opn4a / opsin 4a (melanopsin) / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *ENSDARG0000002209840
opn4b / opsin 4b / OPN4* / Q9UHM6* / opsin 4*ENSDARG0000005392940
opn4.1 / Q1JPS6 / opsin 4.1 / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *ENSDARG0000000755338
opn9 / opsin 9ENSDARG0000010423121
tmtops3a / teleost multiple tissue opsin 3aENSDARG0000003646021
opn7a / opsin 7, group member aENSDARG0000002420820
tmtops2a / teleost multiple tissue opsin 2aENSDARG0000006151520
rrh / retinal pigment epithelium-derived rhodopsin homolog / O14718* / O35214*ENSDARG0000003953420
opn5 / opsin 5 / Q6U736* / Q6VZZ7*ENSDARG0000007011020
opn3 / opsin 3 / Q9H1Y3* / Q9WUK7*ENSDARG0000005277520
tmtopsb / teleost multiple tissue opsin bENSDARG0000003224620
opn7d / opsin 7, group member dENSDARG0000006812420
Q9W6A7 / opn1lw1 / opsin 1 (cone pigments), long-wave-sensitive, 1 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...ENSDARG0000004486219
opn7c / opsin 7, group member cENSDARG0000003086719
tmtops3b / teleost multiple tissue opsin 3bENSDARG0000009062919
opn7b / opsin 7, group member bENSDARG0000011658419
tmtops2b / teleost multiple tissue opsin 2bENSDARG0000002782219
Q9W6A8 / opn1sw2 / opsin 1 (cone pigments), short-wave-sensitive 2ENSDARG0000001727419
opn8b / opsin 8, group member bENSDARG0000007904519


Protein motifs (from Interpro)
Interpro ID Name
 IPR000276  G protein-coupled receptor, rhodopsin-like
 IPR001760  Opsin
 IPR017452  GPCR, rhodopsin-like, 7TM
 IPR027430  Visual pigments (opsins) retinal binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007602 phototransduction IEA
 biological_processGO:0018298 protein-chromophore linkage IEA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0004930 G-protein coupled receptor activity IEA
 molecular_functionGO:0009881 photoreceptor activity IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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