ENSG00000128617


Homo sapiens

Features
Gene ID: ENSG00000128617
  
Biological name :OPN1SW
  
Synonyms : OPN1SW / opsin 1, short wave sensitive / P03999
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: q32.1
Gene start: 128772491
Gene end: 128775790
  
Corresponding Affymetrix probe sets: 208036_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000249389
NCBI entrez gene - 611     See in Manteia.
OMIM - 613522
RefSeq - NM_001708
RefSeq Peptide - NP_001699
swissprot - P03999
swissprot - Q0PJU0
Ensembl - ENSG00000128617
  
Related genetic diseases (OMIM): 190900 - Colorblindness, tritan, 190900
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 opn1sw1ENSDARG00000045677Danio rerio
 Opn1swENSMUSG00000058831Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RHO / P08100 / rhodopsinENSG0000016391445
OPN1MW / P04001 / opsin 1, medium wave sensitiveENSG0000026822143
P0DN78 / OPN1MW3 / opsin 1, medium wave sensitive 3ENSG0000026943343
P0DN77 / OPN1MW2 / opsin 1, medium wave sensitive 2ENSG0000016616043
OPN1LW / P04000 / opsin 1, long wave sensitiveENSG0000010207642
OPN3 / Q9H1Y3 / opsin 3ENSG0000005427726
OPN4 / Q9UHM6 / opsin 4ENSG0000012237526
RRH / O14718 / retinal pigment epithelium-derived rhodopsin homologENSG0000018024522
OPN5 / Q6U736 / opsin 5ENSG0000012481819


Protein motifs (from Interpro)
Interpro ID Name
 IPR000276  G protein-coupled receptor, rhodopsin-like
 IPR001521  Opsin, blue sensitive
 IPR001760  Opsin
 IPR017452  GPCR, rhodopsin-like, 7TM
 IPR027430  Visual pigments (opsins) retinal binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001523 retinoid metabolic process TAS
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0007186 G-protein coupled receptor signaling pathway TAS
 biological_processGO:0007601 visual perception TAS
 biological_processGO:0007602 phototransduction TAS
 biological_processGO:0009584 detection of visible light IEA
 biological_processGO:0018298 protein-chromophore linkage IEA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0001750 photoreceptor outer segment IEA
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0097381 photoreceptor disc membrane TAS
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0004930 G-protein coupled receptor activity IEA
 molecular_functionGO:0008020 G-protein coupled photoreceptor activity IBA
 molecular_functionGO:0009881 photoreceptor activity IEA


Pathways (from Reactome)
Pathway description
The retinoid cycle in cones (daylight vision)
Retinoid cycle disease events
G alpha (i) signalling events
Opsins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000552 Blue-yellow dyschromatopsia 
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 HP:0008275 Abnormal cone-mediated electroretinogram 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000186469 GNG2 / P59768 / G protein subunit gamma 2  / complex / reaction
 ENSG00000134183 GNAT2 / P19087 / G protein subunit alpha transducin 2  / reaction / complex
 ENSG00000128617 OPN1SW / P03999 / opsin 1, short wave sensitive  / reaction
 ENSG00000078369 GNB1 / P62873 / G protein subunit beta 1  / complex / reaction
 ENSG00000102076 OPN1LW / P04000 / opsin 1, long wave sensitive  / reaction
 ENSG00000163914 RHO / P08100 / rhodopsin  / reaction
 ENSG00000114349 GNAT1 / P11488 / G protein subunit alpha transducin 1  / reaction / complex
 ENSG00000268221 OPN1MW / P04001 / opsin 1, medium wave sensitive  / reaction






 

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