ENSG00000163914


Homo sapiens

Features
Gene ID: ENSG00000163914
  
Biological name :RHO
  
Synonyms : P08100 / RHO / rhodopsin
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: q22.1
Gene start: 129528640
Gene end: 129535169
  
Corresponding Affymetrix probe sets: 206454_s_at (Human Genome U133 Plus 2.0 Array)   206455_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000296271
NCBI entrez gene - 6010     See in Manteia.
OMIM - 180380
RefSeq - NM_000539
RefSeq Peptide - NP_000530
swissprot - P08100
Ensembl - ENSG00000163914
  
Related genetic diseases (OMIM): 136880 - Retinitis punctata albescens, 136880
  610445 - Night blindness, congenital stationary, autosomal dominant 1, 610445
  613731 - Retinitis pigmentosa 4, autosomal dominant or recessive, 613731
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rhoENSDARG00000002193Danio rerio
 rhodopsinENSDARG00000111860Danio rerio
 rholENSDARG00000070666Danio rerio
 RHOENSGALG00000020745Gallus gallus
 RhoENSMUSG00000030324Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
OPN1SW / P03999 / opsin 1, short wave sensitiveENSG0000012861745
P0DN78 / OPN1MW3 / opsin 1, medium wave sensitive 3ENSG0000026943343
OPN1MW / P04001 / opsin 1, medium wave sensitiveENSG0000026822143
P0DN77 / OPN1MW2 / opsin 1, medium wave sensitive 2ENSG0000016616043
OPN1LW / P04000 / opsin 1, long wave sensitiveENSG0000010207642
OPN3 / Q9H1Y3 / opsin 3ENSG0000005427728
OPN4 / Q9UHM6 / opsin 4ENSG0000012237526
RRH / O14718 / retinal pigment epithelium-derived rhodopsin homologENSG0000018024524
OPN5 / Q6U736 / opsin 5ENSG0000012481822


Protein motifs (from Interpro)
Interpro ID Name
 IPR000276  G protein-coupled receptor, rhodopsin-like
 IPR000732  Rhodopsin
 IPR001760  Opsin
 IPR017452  GPCR, rhodopsin-like, 7TM
 IPR019477  Rhodopsin, N-terminal
 IPR027430  Visual pigments (opsins) retinal binding site
 IPR037114  Rhodopsin, N-terminal domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001523 retinoid metabolic process TAS
 biological_processGO:0006468 protein phosphorylation IEA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway TAS
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007602 phototransduction IEA
 biological_processGO:0007603 phototransduction, visible light TAS
 biological_processGO:0009416 response to light stimulus IEA
 biological_processGO:0009583 detection of light stimulus IEA
 biological_processGO:0016038 absorption of visible light ISS
 biological_processGO:0016056 rhodopsin mediated signaling pathway TAS
 biological_processGO:0018298 protein-chromophore linkage IEA
 biological_processGO:0022400 regulation of rhodopsin mediated signaling pathway TAS
 biological_processGO:0045494 photoreceptor cell maintenance IEA
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0050953 sensory perception of light stimulus IEA
 biological_processGO:0060041 retina development in camera-type eye IEA
 biological_processGO:0071482 cellular response to light stimulus IEA
 cellular_componentGO:0000139 Golgi membrane TAS
 cellular_componentGO:0001750 photoreceptor outer segment IDA
 cellular_componentGO:0001917 photoreceptor inner segment IDA
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0005911 cell-cell junction IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane ISS
 cellular_componentGO:0030660 Golgi-associated vesicle membrane TAS
 cellular_componentGO:0042622 photoreceptor outer segment membrane IDA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0060170 ciliary membrane TAS
 cellular_componentGO:0060342 photoreceptor inner segment membrane IDA
 cellular_componentGO:0097381 photoreceptor disc membrane IDA
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0004930 G-protein coupled receptor activity TAS
 molecular_functionGO:0005502 11-cis retinal binding ISS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008020 G-protein coupled photoreceptor activity ISS
 molecular_functionGO:0009881 photoreceptor activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
The canonical retinoid cycle in rods (twilight vision)
Activation of the phototransduction cascade
Inactivation, recovery and regulation of the phototransduction cascade
G alpha (i) signalling events
Opsins
VxPx cargo-targeting to cilium


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000035 Abnormality of the testis 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000580 Pigmentary retinopathy 
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 HP:0000602 Ophthalmoplegia 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000654 Decreased electroretinogram (ERG) 
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 HP:0000662 Night blindness 
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 HP:0000842 Hyperinsulinemia 
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 HP:0000987 Scarring 
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 HP:0001123 Visual field defects 
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 HP:0001249 Mental retardation 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0007642 Congenital stationary night blindness 
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 HP:0007663 Decreased central vision 
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 HP:0007675 Progressive night blindness 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007737 Bony spicule pigmentary retinopathy 
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 HP:0007766 Hypoplastic optic disks 
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 HP:0008002 Macular pigmentary changes 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008736 Hypoplasia of penis 
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 HP:0011003 Severe Myopia 
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 HP:0030642 Fundus albipunctatus 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000128617 OPN1SW / P03999 / opsin 1, short wave sensitive  / reaction
 ENSG00000114124 GRK7 / Q8WTQ7 / G protein-coupled receptor kinase 7  / reaction
 ENSG00000103769 P62491 / RAB11A / RAB11A, member RAS oncogene family  / complex / reaction
 ENSG00000090565 O75154 / RAB11FIP3 / RAB11 family interacting protein 3  / complex / reaction
 ENSG00000127928 GNGT1 / P63211 / G protein subunit gamma transducin 1  / reaction
 ENSG00000186469 GNG2 / P59768 / G protein subunit gamma 2  / complex / reaction
 ENSG00000127328 Q96QF0 / RAB3IP / RAB3A interacting protein  / complex / reaction
 ENSG00000114349 GNAT1 / P11488 / G protein subunit alpha transducin 1  / complex / reaction
 ENSG00000078369 GNB1 / P62873 / G protein subunit beta 1  / complex / reaction
 ENSG00000130561 SAG / P10523 / S-antigen visual arrestin  / complex / reaction
 ENSG00000134183 GNAT2 / P19087 / G protein subunit alpha transducin 2  / complex / reaction
 ENSG00000102076 OPN1LW / P04000 / opsin 1, long wave sensitive  / reaction
 ENSG00000163914 RHO / P08100 / rhodopsin  / reaction
 ENSG00000268221 OPN1MW / P04001 / opsin 1, medium wave sensitive  / reaction
 ENSG00000167461 RAB8A / P61006 / RAB8A, member RAS oncogene family  / reaction / complex
 ENSG00000168374 ARF4 / P18085 / ADP ribosylation factor 4  / complex / reaction
 ENSG00000185974 GRK1 / Q15835 / G protein-coupled receptor kinase 1  / reaction
 ENSG00000086717 PPEF1 / O14829 / protein phosphatase with EF-hand domain 1  / reaction
 ENSG00000125388 GRK4 / P32298 / G protein-coupled receptor kinase 4  / reaction
 ENSG00000153317 ASAP1 / Q9ULH1 / ArfGAP with SH3 domain, ankyrin repeat and PH domain 1  / reaction / complex






 

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