ENSGALG00000020745


Gallus gallus

Features
Gene ID: ENSGALG00000020745
  
Biological name :RHO
  
Synonyms : RHO / rhodopsin
  
Possible biological names infered from orthology : P08100 / P15409
  
Species: Gallus gallus
  
Chr. number: 12
Strand: 1
Band:
Gene start: 19554685
Gene end: 19557656
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSGALP00000032596
NCBI entrez gene - 751791     See in Manteia.
RefSeq - NM_001030606
RefSeq Peptide - NP_001025777
swissprot - F1P3Y2
Ensembl - ENSGALG00000020745
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rhoENSDARG00000002193Danio rerio
 rhodopsinENSDARG00000111860Danio rerio
 rholENSDARG00000070666Danio rerio
 RHOENSG00000163914Homo sapiens
 RhoENSMUSG00000030324Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P28683 / OPN1MSW / Green-sensitive opsin ENSGALG0000000284874
OPNP / OPN1LW* / OPN1MW* / P0DN78* / O35599* / P04000* / P04001* / P0DN77* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive* / Medium-wave-sensitive opsin 1 * / opsin 1, medium wave sen...ENSGALG0000000492444
OPNVA / vertebrate ancient opsin isoform 2 ENSGALG0000001051336
Gallus gallus pinopsin-like (LOC771085), mRNA.ENSGALG0000001680228
OPN3 / opsin 3 / Q9H1Y3* / Q9WUK7*ENSGALG0000001076228
OPN4-1 / photopigment melanopsin-like ENSGALG0000004166226
RRH / visual pigment-like receptor peropsin / O14718* / O35214* / retinal pigment epithelium-derived rhodopsin homolog*ENSGALG0000001218125
OPN4 / melanopsin / Q9QXZ9* / Q9UHM6* / opsin 4*ENSGALG0000000193425
OPN5L1ENSGALG0000001515323
OPN5 / opsin-5 / Q6U736* / Q6VZZ7*ENSGALG0000001672522
ENSGALG0000002762422
OPN5L2ENSGALG0000001669922


Protein motifs (from Interpro)
Interpro ID Name
 IPR000276  G protein-coupled receptor, rhodopsin-like
 IPR000732  Rhodopsin
 IPR001760  Opsin
 IPR017452  GPCR, rhodopsin-like, 7TM
 IPR019477  Rhodopsin, N-terminal
 IPR027430  Visual pigments (opsins) retinal binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006468 protein phosphorylation IEA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007602 phototransduction IEA
 biological_processGO:0009416 response to light stimulus IEA
 biological_processGO:0009583 detection of light stimulus IEA
 biological_processGO:0016037 light absorption IDA
 biological_processGO:0018298 protein-chromophore linkage IDA
 biological_processGO:0045494 photoreceptor cell maintenance IEA
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0050953 sensory perception of light stimulus IEA
 biological_processGO:0060041 retina development in camera-type eye IEA
 biological_processGO:0070207 protein homotrimerization IDA
 biological_processGO:0071482 cellular response to light stimulus IEA
 cellular_componentGO:0001750 photoreceptor outer segment IEA
 cellular_componentGO:0001917 photoreceptor inner segment IEA
 cellular_componentGO:0005623 cell IDA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005911 cell-cell junction IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0042622 photoreceptor outer segment membrane IEA
 cellular_componentGO:0060342 photoreceptor inner segment membrane IEA
 cellular_componentGO:0097381 photoreceptor disc membrane IEA
 molecular_functionGO:0001965 G-protein alpha-subunit binding IPI
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0004930 G-protein coupled receptor activity IEA
 molecular_functionGO:0009881 photoreceptor activity IEA
 molecular_functionGO:0042803 protein homodimerization activity IDA


Pathways (from Reactome)
Pathway description
The canonical retinoid cycle in rods (twilight vision)
Activation of the phototransduction cascade
Inactivation, recovery and regulation of the phototransduction cascade
G alpha (i) signalling events
Opsins
VxPx cargo-targeting to cilium


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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