ENSDARG00000027824


Danio rerio

Features
Gene ID: ENSDARG00000027824
  
Biological name :top1mt
  
Synonyms : DNA topoisomerase I mitochondrial / top1mt
  
Possible biological names infered from orthology : Q9P0L0 / Q9WV55 / VAMP associated protein A / VAPA / vesicle-associated membrane protein, associated protein A
  
Species: Danio rerio
  
Chr. number: 24
Strand: 1
Band:
Gene start: 42074143
Gene end: 42075487
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000139898
swissprot - A0A0R4IUV0
ZFIN ID - ZDB-GENE-040624-2
Ensembl - ENSDARG00000027824
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000039455Gallus gallus
 VAPAENSG00000101558Homo sapiens
 VapaENSMUSG00000024091Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
vapal / VAMP (vesicle-associated membrane protein)-associated protein A, like / VAPA* / Q9P0L0* / VAMP associated protein A*ENSDARG0000011586267
vapb / VAMP (vesicle-associated membrane protein)-associated protein B and C / O95292* / VAMP associated protein B and C* / vesicle-associated membrane protein, associated protein B and C*ENSDARG0000007043555


Protein motifs (from Interpro)
Interpro ID Name
 IPR000535  Major sperm protein (MSP) domain
 IPR008962  PapD-like superfamily
 IPR013783  Immunoglobulin-like fold
 IPR016763  Vesicle-associated membrane-protein-associated protein
 IPR030229  Vesicle-associated membrane protein-associated protein A


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA


Pathways (from Reactome)
Pathway description
Sphingolipid de novo biosynthesis
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr