ENSDARG00000028379


Danio rerio

Features
Gene ID: ENSDARG00000028379
  
Biological name :trub2
  
Synonyms : trub2 / TruB pseudouridine (psi) synthase family member 2
  
Possible biological names infered from orthology : O95900 / Q91WG3 / TruB pseudouridine synthase family member 2
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 41023580
Gene end: 41028698
  
Corresponding Affymetrix probe sets: Dr.4385.1.A1_at (Zebrafish Array)   NM_001002200_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000116763
NCBI entrez gene - 431747     See in Manteia.
RefSeq - NM_001002200
RefSeq Peptide - NP_001002200
swissprot - F6P6I4
ZFIN ID - ZDB-GENE-040704-41
Ensembl - ENSDARG00000028379
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRUB2ENSGALG00000004920Gallus gallus
 TRUB2ENSG00000167112Homo sapiens
 Trub2ENSMUSG00000039826Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trub1 / TruB pseudouridine (psi) synthase family member 1 / Q8WWH5* / Q8C0D0* / Probable tRNA pseudouridine synthase 1 * / TruB pseudouridine synthase family member 1*ENSDARG0000005380522


Protein motifs (from Interpro)
Interpro ID Name
 IPR002501  Pseudouridine synthase II, N-terminal
 IPR020103  Pseudouridine synthase, catalytic domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001522 pseudouridine synthesis IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0009451 RNA modification IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0009982 pseudouridine synthase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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