ENSDARG00000028971


Danio rerio

Features
Gene ID: ENSDARG00000028971
  
Biological name :cpsf2
  
Synonyms : cleavage and polyadenylation specific factor 2 / cpsf2
  
Possible biological names infered from orthology : Cleavage and polyadenylation specificity factor subunit 2 / O35218 / Q9P2I0
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 50052116
Gene end: 50089898
  
Corresponding Affymetrix probe sets: Dr.12526.1.A1_at (Zebrafish Array)   Dr.12526.2.S1_at (Zebrafish Array)   NM_001002384_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000156082
Ensembl peptide - ENSDARP00000122122
Ensembl peptide - ENSDARP00000047211
NCBI entrez gene - 436657     See in Manteia.
RefSeq - NM_001002384
RefSeq - XM_017352464
RefSeq Peptide - NP_001002384
swissprot - F1QX42
swissprot - F1QVV4
ZFIN ID - ZDB-GENE-040718-79
Ensembl - ENSDARG00000028971
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CPSF2ENSGALG00000010783Gallus gallus
 CPSF2ENSG00000165934Homo sapiens
 Cpsf2ENSMUSG00000041781Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001279  Metallo-beta-lactamase
 IPR011108  Zn-dependent metallo-hydrolase, RNA specificity domain
 IPR022712  Beta-Casp domain
 IPR025069  Cleavage and polyadenylation specificity factor 2, C-terminal
 IPR027075  Cleavage and polyadenylation specificity factor subunit 2
 IPR035639  CPSF2, metallo-hydrolase domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006378 mRNA polyadenylation IEA
 biological_processGO:0006379 mRNA cleavage IEA
 biological_processGO:0006397 mRNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005847 mRNA cleavage and polyadenylation specificity factor complex IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA 3-end processing
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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