ENSGALG00000010783


Gallus gallus

Features
Gene ID: ENSGALG00000010783
  
Biological name :CPSF2
  
Synonyms : cleavage and polyadenylation specificity factor subunit 2 / CPSF2
  
Possible biological names infered from orthology : cleavage and polyadenylation specific factor 2 / O35218 / Q9P2I0
  
Species: Gallus gallus
  
Chr. number: 5
Strand: 1
Band:
Gene start: 44630916
Gene end: 44644426
  
Corresponding Affymetrix probe sets: GgaAffx.6810.1.S1_at (Chicken Array)   GgaAffx.6810.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000017517
NCBI entrez gene - 423416     See in Manteia.
RefSeq - NM_001031208
RefSeq - XM_015287452
RefSeq - XM_015287453
RefSeq Peptide - NP_001026379
swissprot - F1NMN0
Ensembl - ENSGALG00000010783
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cpsf2ENSDARG00000028971Danio rerio
 CPSF2ENSG00000165934Homo sapiens
 Cpsf2ENSMUSG00000041781Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001279  Metallo-beta-lactamase
 IPR011108  Zn-dependent metallo-hydrolase, RNA specificity domain
 IPR022712  Beta-Casp domain
 IPR025069  Cleavage and polyadenylation specificity factor 2, C-terminal
 IPR027075  Cleavage and polyadenylation specificity factor subunit 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006378 mRNA polyadenylation IEA
 biological_processGO:0006379 mRNA cleavage IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006398 mRNA 3"-end processing by stem-loop binding and cleavage IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005847 mRNA cleavage and polyadenylation specificity factor complex IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA 3-end processing
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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