ENSDARG00000029069


Danio rerio

Features
Gene ID: ENSDARG00000029069
  
Biological name :tnni2a.4
  
Synonyms : tnni2a.4 / troponin I type 2a (skeletal, fast), tandem duplicate 4
  
Possible biological names infered from orthology : P13412 / P48788 / TNNI2 / troponin I2, fast skeletal type / Troponin I, fast skeletal muscle
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 31276842
Gene end: 31288658
  
Corresponding Affymetrix probe sets: Dr.26411.1.S1_at (Zebrafish Array)   Dr.26411.1.S1_a_at (Zebrafish Array)   Dr.26411.2.S1_s_at (Zebrafish Array)   NM_001009901_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000037759
Ensembl peptide - ENSDARP00000154984
NCBI entrez gene - 494164     See in Manteia.
RefSeq - NM_001009901
RefSeq Peptide - NP_001009901
swissprot - Q0D2W2
ZFIN ID - ZDB-GENE-040625-119
Ensembl - ENSDARG00000029069
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TNNI2ENSGALG00000006591Gallus gallus
 TNNI2ENSG00000130598Homo sapiens
 Tnni2ENSMUSG00000031097Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tnni2b.1 / troponin I type 2b (skeletal, fast), tandem duplicate 1 / TNNI2* / P48788* / P13412* / troponin I2, fast skeletal type* / Troponin I, fast skeletal muscle *ENSDARG0000003595882
tnni2b.2 / troponin I type 2b (skeletal, fast), tandem duplicate 2 / TNNI2* / P48788* / P13412* / troponin I2, fast skeletal type* / Troponin I, fast skeletal muscle *ENSDARG0000002999581
tnni2a.3 / troponin I type 2a (skeletal, fast), tandem duplicate 3 / TNNI2* / P48788* / P13412* / troponin I2, fast skeletal type* / Troponin I, fast skeletal muscle *ENSDARG0000001375278
tnni2a.1 / troponin I type 2a (skeletal, fast), tandem duplicate 1 / TNNI2* / P48788* / P13412* / troponin I2, fast skeletal type* / Troponin I, fast skeletal muscle *ENSDARG0000004559273
tnni2a.2 / troponin I type 2a (skeletal, fast), tandem duplicate 2 / TNNI2* / P48788* / P13412* / troponin I2, fast skeletal type* / Troponin I, fast skeletal muscle *ENSDARG0000000584165
tnni1b / troponin I type 1b (skeletal, slow) / TNNI1* / P19237* / troponin I1, slow skeletal type*ENSDARG0000005270855
tnni1c / troponin I, skeletal, slow cENSDARG0000004255954
tnni1a / troponin I type 1a (skeletal, slow) / TNNI1* / Q9WUZ5* / P19237* / troponin I1, slow skeletal type* / Troponin I, slow skeletal muscle *ENSDARG0000000047453
tnni1d / troponin I, skeletal, slow dENSDARG0000007376653
tnni4b.2 / troponin I4b, tandem duplicate 2ENSDARG0000003667152
tnni4a / troponin I4aENSDARG0000009987047
tnni4b.1 / troponin I4b, tandem duplicate 1ENSDARG0000009299944


Protein motifs (from Interpro)
Interpro ID Name
 IPR001978  Troponin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003009 skeletal muscle contraction IBA
 biological_processGO:0030239 myofibril assembly IMP
 biological_processGO:0060048 cardiac muscle contraction IBA
 cellular_componentGO:0005861 troponin complex IBA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Striated Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000076 swim bladder swim bladder absent , abnormal
swim bladder uninflated , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased mobility , abnormal
Show

 ZFA:0001115 trunk trunk muscle refractivity , abnormal
Show

 ZFA:0009117 fast muscle cell fast muscle cell myofibril disorganized , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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