ENSDARG00000052708


Danio rerio

Features
Gene ID: ENSDARG00000052708
  
Biological name :tnni1b
  
Synonyms : tnni1b / troponin I type 1b (skeletal, slow)
  
Possible biological names infered from orthology : P19237 / Q9WUZ5 / TNNI1 / troponin I1, slow skeletal type / Troponin I, slow skeletal muscle
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 54805136
Gene end: 54826061
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000124278
Ensembl peptide - ENSDARP00000153000
Ensembl peptide - ENSDARP00000006632
Ensembl peptide - ENSDARP00000124141
NCBI entrez gene - 494070     See in Manteia.
RefSeq - NM_001008613
RefSeq Peptide - NP_001008613
swissprot - E7F5J9
swissprot - F8W417
swissprot - Q5PR62
ZFIN ID - ZDB-GENE-041212-37
Ensembl - ENSDARG00000052708
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TNNI1ENSGALG00000000313Gallus gallus
 TNNI1ENSG00000159173Homo sapiens
 Tnni1ENSMUSG00000026418Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tnni1a / troponin I type 1a (skeletal, slow) / TNNI1* / Q9WUZ5* / P19237* / troponin I1, slow skeletal type* / Troponin I, slow skeletal muscle *ENSDARG0000000047485
tnni1c / troponin I, skeletal, slow cENSDARG0000004255968
tnni1d / troponin I, skeletal, slow dENSDARG0000007376664
tnni4b.2 / troponin I4b, tandem duplicate 2ENSDARG0000003667161
tnni2a.1 / troponin I type 2a (skeletal, fast), tandem duplicate 1 / TNNI2* / P48788* / P13412* / troponin I2, fast skeletal type* / Troponin I, fast skeletal muscle *ENSDARG0000004559258
tnni2b.1 / troponin I type 2b (skeletal, fast), tandem duplicate 1 / TNNI2* / P48788* / P13412* / troponin I2, fast skeletal type* / Troponin I, fast skeletal muscle *ENSDARG0000003595853
tnni2a.4 / troponin I type 2a (skeletal, fast), tandem duplicate 4 / TNNI2* / P48788* / P13412* / troponin I2, fast skeletal type* / Troponin I, fast skeletal muscle *ENSDARG0000002906953
tnni4a / troponin I4aENSDARG0000009987053
tnni2b.2 / troponin I type 2b (skeletal, fast), tandem duplicate 2 / TNNI2* / P48788* / P13412* / troponin I2, fast skeletal type* / Troponin I, fast skeletal muscle *ENSDARG0000002999553
tnni2a.3 / troponin I type 2a (skeletal, fast), tandem duplicate 3 / TNNI2* / P48788* / P13412* / troponin I2, fast skeletal type* / Troponin I, fast skeletal muscle *ENSDARG0000001375251
tnni2a.2 / troponin I type 2a (skeletal, fast), tandem duplicate 2 / TNNI2* / P48788* / P13412* / troponin I2, fast skeletal type* / Troponin I, fast skeletal muscle *ENSDARG0000000584151
tnni4b.1 / troponin I4b, tandem duplicate 1ENSDARG0000009299950


Protein motifs (from Interpro)
Interpro ID Name
 IPR001978  Troponin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003009 skeletal muscle contraction IBA
 biological_processGO:0007507 heart development IMP
 biological_processGO:0060048 cardiac muscle contraction IBA
 cellular_componentGO:0005861 troponin complex IBA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Striated Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000009 cardiac ventricle cardiac ventricle morphology , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000114 heart heart shape , abnormal
Show

 ZFA:0000471 atrium atrium morphology , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000037539 tnnc1b / troponin C type 1b (slow) / TNNC1* / P63316* / P19123* / troponin C1, slow skeletal and cardiac type* / Troponin C, slow skeletal and cardiac muscles *  / complex
 ENSDARG00000037954 tnnt1 / troponin T type 1 (skeletal, slow) / P13805* / O88346* / troponin T1, skeletal, slow* / troponin T1, slow skeletal type*  / complex
 ENSDARG00000070835 tnnc2 / troponin C type 2 (fast) / P20801* / P02585* / Troponin C, skeletal muscle * / troponin C2, fast skeletal type*  / complex
 ENSDARG00000095002 si:rp71-17i16.4 / TNNC2* / P20801* / P02585* / Troponin C, skeletal muscle * / troponin C2, fast skeletal type*  / complex






 

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