Manteia

ENSDARG00000037539

Danio rerio

Features

Gene ID:	ENSDARG00000037539

Biological name :	tnnc1b

Synonyms :	tnnc1b / troponin C type 1b (slow)

Possible biological names infered from orthology :	P19123 / P63316 / TNNC1 / troponin C1, slow skeletal and cardiac type / Troponin C, slow skeletal and cardiac muscles

Species:	Danio rerio

Chr. number:	23
Strand:	1
Band:
Gene start:	20110086
Gene end:	20112596

Corresponding Affymetrix probe sets:

Cross references:	Ensembl peptide - ENSDARP00000054663 NCBI entrez gene - 415175 See in Manteia. swissprot - Q6IQ64 ZFIN ID - ZDB-GENE-040625-62 Ensembl - ENSDARG00000037539

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
TNNC1	ENSGALG00000001459	Gallus gallus
TNNC1	ENSG00000114854	Homo sapiens
Tnnc1	ENSMUSG00000091898	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
tnnc1a / troponin C type 1a (slow)	ENSDARG00000011400	89
tnnc2 / troponin C type 2 (fast) / P20801* / P02585* / Troponin C, skeletal muscle * / troponin C2, fast skeletal type*	ENSDARG00000070835	64
si:rp71-17i16.4 / TNNC2* / P20801* / P02585* / Troponin C, skeletal muscle * / troponin C2, fast skeletal type*	ENSDARG00000095002	60
calm2a / calm2b / calm3a / Q6PI52 / calmodulin 2a (phosphorylase kinase, delta)	ENSDARG00000100825	48
calm1b / calm2a / calm2b / Q6PI52 / calm3a / calmodulin 1b / Calm3* / CALM1* / P0DP27* / P0DP28* / P0DP26* / P0DP23* / calmodulin 1*	ENSDARG00000034187	48
calm2a / calm2b / calm3a / Q6PI52 / calmodulin 2b, (phosphorylase kinase, delta)	ENSDARG00000031427	48
calm2a / calm2b / calm1a / calm3a / Q6PI52 / calmodulin 1a	ENSDARG00000021811	48
calm2b / calm3a / calm2a / calm3b / Q6PI52 / calmodulin 2a (phosphorylase kinase, delta)	ENSDARG00000074057	48
calm2a / calm2b / calm3a / Q6PI52 / calmodulin 3a (phosphorylase kinase, delta)	ENSDARG00000015050	46
cabp2a / calcium binding protein 2a / CABP2* / Q9NPB3* / calcium binding protein 2*	ENSDARG00000052016	37
cabp5b / calcium binding protein 5b / CABP5* / Q9JLK3* / Q9NP86* / calcium binding protein 5*	ENSDARG00000028485	34
cabp1a / calcium binding protein 1a / CABP1* / Q9JLK7* / Q9NZU7* / calcium binding protein 1*	ENSDARG00000019990	34
cabp1b / calcium binding protein 1b / CABP1* / Q9JLK7* / Q9NZU7* / calcium binding protein 1*	ENSDARG00000033411	34
cabp4 / calcium binding protein 4 / P57796* / Q8VHC5*	ENSDARG00000008866	33
cabp5a / calcium binding protein 5a / CABP5* / Q9JLK3* / Q9NP86* / calcium binding protein 5*	ENSDARG00000002576	33
cabp2b / calcium binding protein 2b / CABP2* / Q9NPB3* / calcium binding protein 2*	ENSDARG00000052277	32
si:cabz01076231.1 / CABP4* / P57796* / Q8VHC5* / calcium binding protein 4*	ENSDARG00000105631	32
calml4a / calmodulin-like 4a / CALML4* / Q91WQ9* / Q96GE6* / calmodulin like 4* / Calmodulin-like protein 4 *	ENSDARG00000075800	32
calml4b / calmodulin-like 4b	ENSDARG00000059347	25

Protein motifs (from Interpro)

Interpro ID	Name
IPR002048	EF-hand domain
IPR011992	EF-hand domain pair
IPR018247	EF-Hand 1, calcium-binding site

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0003009	skeletal muscle contraction	IBA
biological_process	GO:0006937	regulation of muscle contraction	IBA
biological_process	GO:0060048	cardiac muscle contraction	IMP
cellular_component	GO:0005861	troponin complex	IBA
molecular_function	GO:0005509	calcium ion binding	IBA
molecular_function	GO:0048306	calcium-dependent protein binding	IBA
molecular_function	GO:0051015	actin filament binding	IBA

Pathways (from Reactome)

Pathway description

Striated Muscle Contraction

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID	Name	Interaction type
ENSDARG00000052708	tnni1b / troponin I type 1b (skeletal, slow) / TNNI1* / P19237* / troponin I1, slow skeletal type*	/ complex
ENSDARG00000037954	tnnt1 / troponin T type 1 (skeletal, slow) / P13805* / O88346* / troponin T1, skeletal, slow* / troponin T1, slow skeletal type*	/ complex

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr