ENSGALG00000001459


Gallus gallus

Features
Gene ID: ENSGALG00000001459
  
Biological name :TNNC1
  
Synonyms : P09860 / TNNC1 / Troponin C, slow skeletal and cardiac muscles
  
Possible biological names infered from orthology : P19123 / P63316 / troponin C1, slow skeletal and cardiac type
  
Species: Gallus gallus
  
Chr. number: 12
Strand: -1
Band:
Gene start: 588236
Gene end: 593708
  
Corresponding Affymetrix probe sets: Gga.3041.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000002212
NCBI entrez gene - 396032     See in Manteia.
RefSeq - NM_205133
RefSeq Peptide - NP_990464
swissprot - P09860
Ensembl - ENSGALG00000001459
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tnnc1bENSDARG00000037539Danio rerio
 TNNC1ENSG00000114854Homo sapiens
 Tnnc1ENSMUSG00000091898Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TNNC2 / P02588 / Troponin C, skeletal muscle / P20801* / P02585* / troponin C2, fast skeletal type*ENSGALG0000000683568
CALM1 / P62149 / Calmodulin / CALM2* / P0DP24* / calmodulin 2*ENSGALG0000002644548
CALM2 / P62149 / Calmodulin / Calm3* / CALM1* / P0DP23* / P0DP26* / P0DP27* / P0DP28* / calmodulin 1*ENSGALG0000001002348
CALML3 / calmodulin like 3 / P27482* / Q9D6P8* / Calmodulin-like protein 3 *ENSGALG0000000842448
CABP2 / calcium-binding protein 2 / Q9NPB3*ENSGALG0000003749735
CABP1 / calcium binding protein 1 / Q9JLK7* / Q9NZU7*ENSGALG0000000711632
CALML4 / calmodulin like 4 / Q91WQ9* / Q96GE6* / Calmodulin-like protein 4 *ENSGALG0000000797930


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003009 skeletal muscle contraction IBA
 biological_processGO:0006937 regulation of muscle contraction IEA
 biological_processGO:0014883 transition between fast and slow fiber IEA
 biological_processGO:0032972 regulation of muscle filament sliding speed IEA
 biological_processGO:0043462 regulation of ATPase activity IEA
 biological_processGO:0055010 ventricular cardiac muscle tissue morphogenesis IEA
 biological_processGO:0060048 cardiac muscle contraction IEA
 cellular_componentGO:0005861 troponin complex IEA
 cellular_componentGO:1990584 cardiac Troponin complex IEA
 molecular_functionGO:0005509 calcium ion binding ISS
 molecular_functionGO:0031013 troponin I binding IEA
 molecular_functionGO:0031014 troponin T binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0048306 calcium-dependent protein binding IEA
 molecular_functionGO:0051015 actin filament binding IEA


Pathways (from Reactome)
Pathway description
Striated Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000006572 TNNT3 / P12620 / Troponin T, fast skeletal muscle isoforms / P45378* / troponin T3, skeletal, fast* / troponin T3, fast skeletal type*  / complex






 

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