ENSG00000114854


Homo sapiens

Features
Gene ID: ENSG00000114854
  
Biological name :TNNC1
  
Synonyms : P63316 / TNNC1 / troponin C1, slow skeletal and cardiac type
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: p21.1
Gene start: 52451102
Gene end: 52454070
  
Corresponding Affymetrix probe sets: 209904_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000232975
Ensembl peptide - ENSP00000420596
NCBI entrez gene - 7134     See in Manteia.
OMIM - 191040
RefSeq - NM_003280
RefSeq Peptide - NP_003271
swissprot - C9JDI3
swissprot - P63316
swissprot - Q6FH91
Ensembl - ENSG00000114854
  
Related genetic diseases (OMIM): 611879 - Cardiomyopathy, dilated, 1Z, 611879
  613243 - Cardiomyopathy, hypertrophic, 13, 613243
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tnnc1bENSDARG00000037539Danio rerio
 TNNC1ENSGALG00000001459Gallus gallus
 Tnnc1ENSMUSG00000091898Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TNNC2 / P02585 / troponin C2, fast skeletal typeENSG0000010147065
CALM2 / P0DP24 / calmodulin 2ENSG0000014393348
CALM1 / P0DP23 / calmodulin 1ENSG0000019866848
CALM3 / P0DP25 / calmodulin 3ENSG0000016001448
CALML3 / P27482 / calmodulin like 3ENSG0000017836344
CALML6 / Q8TD86 / calmodulin like 6ENSG0000016988538
CABP1 / Q9NZU7 / calcium binding protein 1ENSG0000015778235
CABP5 / Q9NP86 / calcium binding protein 5ENSG0000010550734
CABP2 / Q9NPB3 / calcium binding protein 2ENSG0000016779133
CABP4 / P57796 / calcium binding protein 4ENSG0000017554433
CALML5 / Q9NZT1 / calmodulin like 5ENSG0000017837229
CALML4 / Q96GE6 / calmodulin like 4ENSG0000012900729


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002086 diaphragm contraction IEA
 biological_processGO:0003009 skeletal muscle contraction IBA
 biological_processGO:0006937 regulation of muscle contraction TAS
 biological_processGO:0010038 response to metal ion IEA
 biological_processGO:0014883 transition between fast and slow fiber IEA
 biological_processGO:0030049 muscle filament sliding TAS
 biological_processGO:0032972 regulation of muscle filament sliding speed IEA
 biological_processGO:0043462 regulation of ATPase activity IEA
 biological_processGO:0055010 ventricular cardiac muscle tissue morphogenesis IMP
 biological_processGO:0060048 cardiac muscle contraction IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005861 troponin complex IDA
 cellular_componentGO:0043292 contractile fiber IEA
 cellular_componentGO:1990584 cardiac Troponin complex IDA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0031013 troponin I binding IDA
 molecular_functionGO:0031014 troponin T binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IDA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0048306 calcium-dependent protein binding IPI
 molecular_functionGO:0051015 actin filament binding IEA


Pathways (from Reactome)
Pathway description
Striated Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000982 Palmoplantar keratoderma 
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 HP:0001639 Hypertrophic cardiomyopathy 
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 HP:0001644 Dilated cardiomyopathy 
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 HP:0001663 Ventricular fibrillation 
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 HP:0001874 Abnormality of neutrophil 
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 HP:0003198 Myopathy 
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003457 Abnormal EMG findings "Abnormal results of investigations using electromyography (EMG)." [HPO:curators]
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 HP:0005110 Atrial fibrillation 
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 HP:0011711 Left anterior fascicular block "Conduction block in the anterior division of the left bundle branch of the bundle of His." [DDD:dbrown]
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 HP:0011712 Right bundle branch block "A conduction block of the right branch of the bundle of His. This manifests as a prolongation of the QRS complex (greater than 0.12 s) with delayed activation of the right ventricle and terminal delay on the EKG." [DDD:dbrown, HPO:probinson]
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 HP:0100578 Lipoatrophy "Localized loss of fat tissue." [HPO:sdoelken]
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 HP:0100749 Chest pain 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000130598 TNNI2 / P48788 / troponin I2, fast skeletal type  / complex
 ENSG00000105048 TNNT1 / P13805 / troponin T1, slow skeletal type  / complex
 ENSG00000118194 TNNT2 / P45379 / troponin T2, cardiac type  / complex
 ENSG00000130595 TNNT3 / P45378 / troponin T3, fast skeletal type  / complex
 ENSG00000159173 TNNI1 / P19237 / troponin I1, slow skeletal type  / complex
 ENSG00000129991 TNNI3 / P19429 / troponin I3, cardiac type  / complex






 

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