ENSG00000105048


Homo sapiens

Features
Gene ID: ENSG00000105048
  
Biological name :TNNT1
  
Synonyms : P13805 / TNNT1 / troponin T1, slow skeletal type
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: -1
Band: q13.42
Gene start: 55132794
Gene end: 55149354
  
Corresponding Affymetrix probe sets: 1569949_at (Human Genome U133 Plus 2.0 Array)   213201_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000470854
Ensembl peptide - ENSP00000469564
Ensembl peptide - ENSP00000470777
Ensembl peptide - ENSP00000291901
Ensembl peptide - ENSP00000349233
Ensembl peptide - ENSP00000439640
Ensembl peptide - ENSP00000464843
Ensembl peptide - ENSP00000465544
Ensembl peptide - ENSP00000465686
Ensembl peptide - ENSP00000465991
Ensembl peptide - ENSP00000467176
Ensembl peptide - ENSP00000467299
Ensembl peptide - ENSP00000467789
Ensembl peptide - ENSP00000467881
Ensembl peptide - ENSP00000467980
NCBI entrez gene - 7138     See in Manteia.
OMIM - 191041
RefSeq - XM_017027187
RefSeq - NM_001126132
RefSeq - NM_001126133
RefSeq - NM_001291774
RefSeq - NM_003283
RefSeq - XM_011527246
RefSeq - XM_017027186
RefSeq Peptide - NP_001119605
RefSeq Peptide - NP_001278703
RefSeq Peptide - NP_003274
RefSeq Peptide - NP_001119604
swissprot - K7EKM3
swissprot - K7ELB0
swissprot - K7EQL4
swissprot - M0QX01
swissprot - M0QY38
swissprot - M0QZY5
swissprot - M0QZU8
swissprot - P13805
swissprot - Q3B759
swissprot - K7EKB5
Ensembl - ENSG00000105048
  
Related genetic diseases (OMIM): 605355 - Nemaline myopathy 5, Amish type, 605355
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tnnt1ENSDARG00000037954Danio rerio
 Tnnt1ENSMUSG00000064179Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TNNT2 / P45379 / troponin T2, cardiac typeENSG0000011819456
TNNT3 / P45378 / troponin T3, fast skeletal typeENSG0000013059556


Protein motifs (from Interpro)
Interpro ID Name
 IPR001978  Troponin
 IPR027707  Troponin T


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003009 skeletal muscle contraction IMP
 biological_processGO:0006937 regulation of muscle contraction IEA
 biological_processGO:0014883 transition between fast and slow fiber IEA
 biological_processGO:0030049 muscle filament sliding TAS
 biological_processGO:0031444 slow-twitch skeletal muscle fiber contraction IEA
 biological_processGO:0045932 negative regulation of muscle contraction IDA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005861 troponin complex IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005523 tropomyosin binding IMP
 molecular_functionGO:0031014 troponin T binding IEA


Pathways (from Reactome)
Pathway description
Striated Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001547 Abnormality of the morphology or size of the rib cage 
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 HP:0002063 Rigidity 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002194 Delayed gross motor development 
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 HP:0003044 Shoulder contractures 
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 HP:0003184 Decreased hip abduction 
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 HP:0003198 Myopathy 
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 HP:0003273 Hip contractures 
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 HP:0003323 Muscle weakness, progressive 
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 HP:0003593 Early onset 
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 HP:0003798 Nemaline bodies "Nemaline rods are abnormal bodies are abnormal that can occur in skeletal muscle fibers. THe rods can be observed on histological analysis of muscle biopsy tissue or upon electron microscopy, where they appear either as extensions of sarcomeric Z-lines, in random array without obvious attachment to Z-lines (often in areas devoid of sarcomeres) or in large clusters localized at the sarcolemma or intermyofibrillar spaces." [HPO:curators, pmid:11333380]
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 HP:0003803 Type 1 muscle fiber predominance "An abnormal predominance of type I muscle fibers (in general, this feature can only be observed on muscle biopsy)." [HPO:curators]
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 HP:0007126 Proximal amyotrophy "Amyotrophy (muscular atrophy) affecting the proximal musculature." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000114854 TNNC1 / P63316 / troponin C1, slow skeletal and cardiac type  / complex
 ENSG00000129991 TNNI3 / P19429 / troponin I3, cardiac type  / complex
 ENSG00000130598 TNNI2 / P48788 / troponin I2, fast skeletal type  / complex
 ENSG00000101470 TNNC2 / P02585 / troponin C2, fast skeletal type  / complex
 ENSG00000159173 TNNI1 / P19237 / troponin I1, slow skeletal type  / complex






 

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