Manteia

ENSDARG00000034187

Danio rerio

Features

Gene ID:	ENSDARG00000034187

Biological name :	calm1b

Synonyms :	calm1b / calm2a / calm2b / calm3a / calmodulin 1b / Q6PI52

Possible biological names infered from orthology :	CALM1 / Calm3 / calmodulin 1 / P0DP23 / P0DP26 / P0DP27 / P0DP28

Species:	Danio rerio

Chr. number:	20
Strand:	1
Band:
Gene start:	16743056
Gene end:	16775258

Corresponding Affymetrix probe sets:	Dr.11241.1.S1_at (Zebrafish Array) NM_200082_at (Zebrafish Genome Array with custom cdf files)

Cross references:	Ensembl peptide - ENSDARP00000050307 Ensembl peptide - ENSDARP00000148382 NCBI entrez gene - 336121 See in Manteia. NCBI entrez gene - 368217 See in Manteia. NCBI entrez gene - 192322 See in Manteia. RefSeq - NM_200082 RefSeq Peptide - NP_956290 RefSeq Peptide - NP_956376 RefSeq Peptide - NP_999901 swissprot - Q6PI52 swissprot - B2GQW3 ZFIN ID - ZDB-GENE-030804-3 ZFIN ID - ZDB-GENE-020415-2 ZFIN ID - ZDB-GENE-030131-5590 ZFIN ID - ZDB-GENE-030804-2 Ensembl - ENSDARG00000034187

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
CALM2	ENSGALG00000010023	Gallus gallus
CALM1	ENSG00000198668	Homo sapiens
Calm1	ENSMUSG00000001175	Mus musculus
Calm3	ENSMUSG00000019370	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
calm2a / calm2b / calm3a / Q6PI52 / calmodulin 2a (phosphorylase kinase, delta)	ENSDARG00000100825	100
calm2a / calm2b / calm3a / Q6PI52 / calmodulin 2b, (phosphorylase kinase, delta)	ENSDARG00000031427	100
calm2b / calm3a / calm2a / calm3b / Q6PI52 / calmodulin 2a (phosphorylase kinase, delta)	ENSDARG00000074057	100
calm2a / calm2b / calm1a / calm3a / Q6PI52 / calmodulin 1a	ENSDARG00000021811	100
calm2a / calm2b / calm3a / Q6PI52 / calmodulin 3a (phosphorylase kinase, delta)	ENSDARG00000015050	94
tnnc1a / troponin C type 1a (slow)	ENSDARG00000011400	52
tnnc1b / troponin C type 1b (slow) / TNNC1* / P63316* / P19123* / troponin C1, slow skeletal and cardiac type* / Troponin C, slow skeletal and cardiac muscles *	ENSDARG00000037539	52
tnnc2 / troponin C type 2 (fast) / P20801* / P02585* / Troponin C, skeletal muscle * / troponin C2, fast skeletal type*	ENSDARG00000070835	52
calml4a / calmodulin-like 4a / CALML4* / Q91WQ9* / Q96GE6* / calmodulin like 4* / Calmodulin-like protein 4 *	ENSDARG00000075800	51
si:rp71-17i16.4 / TNNC2* / P20801* / P02585* / Troponin C, skeletal muscle * / troponin C2, fast skeletal type*	ENSDARG00000095002	50
cabp2a / calcium binding protein 2a / CABP2* / Q9NPB3* / calcium binding protein 2*	ENSDARG00000052016	46
cabp5a / calcium binding protein 5a / CABP5* / Q9JLK3* / Q9NP86* / calcium binding protein 5*	ENSDARG00000002576	42
cabp5b / calcium binding protein 5b / CABP5* / Q9JLK3* / Q9NP86* / calcium binding protein 5*	ENSDARG00000028485	42
cabp1b / calcium binding protein 1b / CABP1* / Q9JLK7* / Q9NZU7* / calcium binding protein 1*	ENSDARG00000033411	40
calml4b / calmodulin-like 4b	ENSDARG00000059347	40
si:cabz01076231.1 / CABP4* / P57796* / Q8VHC5* / calcium binding protein 4*	ENSDARG00000105631	40
cabp1a / calcium binding protein 1a / CABP1* / Q9JLK7* / Q9NZU7* / calcium binding protein 1*	ENSDARG00000019990	39
cabp2b / calcium binding protein 2b / CABP2* / Q9NPB3* / calcium binding protein 2*	ENSDARG00000052277	39
cabp4 / calcium binding protein 4 / P57796* / Q8VHC5*	ENSDARG00000008866	38

Protein motifs (from Interpro)

Interpro ID	Name
IPR002048	EF-hand domain
IPR011992	EF-hand domain pair
IPR018247	EF-Hand 1, calcium-binding site

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
molecular_function	GO:0005509	calcium ion binding	IEA
molecular_function	GO:0046872	metal ion binding	IEA

Pathways (from Reactome)

Pathway description

No match

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

External programs and data are copyrighted by and are the property of their respective authors. The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation
		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr