ENSDARG00000070835


Danio rerio

Features
Gene ID: ENSDARG00000070835
  
Biological name :tnnc2
  
Synonyms : tnnc2 / troponin C type 2 (fast)
  
Possible biological names infered from orthology : P02585 / P20801 / troponin C2, fast skeletal type / Troponin C, skeletal muscle
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 20422661
Gene end: 20427299
  
Corresponding Affymetrix probe sets: Dr.8472.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000123658
Ensembl peptide - ENSDARP00000095111
NCBI entrez gene - 58082     See in Manteia.
RefSeq - NM_131563
RefSeq Peptide - NP_571638
swissprot - E9QBF1
swissprot - Q9I8U8
ZFIN ID - ZDB-GENE-000322-2
Ensembl - ENSDARG00000070835
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TNNC2ENSGALG00000006835Gallus gallus
 TNNC2ENSG00000101470Homo sapiens
 Tnnc2ENSMUSG00000017300Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:rp71-17i16.4 / TNNC2* / P20801* / P02585* / Troponin C, skeletal muscle * / troponin C2, fast skeletal type*ENSDARG0000009500279
tnnc1b / troponin C type 1b (slow) / TNNC1* / P63316* / P19123* / troponin C1, slow skeletal and cardiac type* / Troponin C, slow skeletal and cardiac muscles *ENSDARG0000003753964
tnnc1a / troponin C type 1a (slow)ENSDARG0000001140062
calm1b / calm2a / calm2b / Q6PI52 / calm3a / calmodulin 1b / Calm3* / CALM1* / P0DP27* / P0DP28* / P0DP26* / P0DP23* / calmodulin 1*ENSDARG0000003418749
calm2a / calm2b / calm3a / Q6PI52 / calmodulin 2b, (phosphorylase kinase, delta)ENSDARG0000003142749
calm2b / calm3a / calm2a / calm3b / Q6PI52 / calmodulin 2a (phosphorylase kinase, delta)ENSDARG0000007405749
calm2a / calm2b / calm3a / Q6PI52 / calmodulin 2a (phosphorylase kinase, delta)ENSDARG0000010082549
calm2a / calm2b / calm1a / calm3a / Q6PI52 / calmodulin 1aENSDARG0000002181149
calm2a / calm2b / calm3a / Q6PI52 / calmodulin 3a (phosphorylase kinase, delta)ENSDARG0000001505046
cabp2a / calcium binding protein 2a / CABP2* / Q9NPB3* / calcium binding protein 2*ENSDARG0000005201639
si:cabz01076231.1 / CABP4* / P57796* / Q8VHC5* / calcium binding protein 4*ENSDARG0000010563137
cabp5a / calcium binding protein 5a / CABP5* / Q9JLK3* / Q9NP86* / calcium binding protein 5*ENSDARG0000000257635
cabp4 / calcium binding protein 4 / P57796* / Q8VHC5*ENSDARG0000000886635
cabp2b / calcium binding protein 2b / CABP2* / Q9NPB3* / calcium binding protein 2*ENSDARG0000005227734
cabp1b / calcium binding protein 1b / CABP1* / Q9JLK7* / Q9NZU7* / calcium binding protein 1*ENSDARG0000003341134
cabp5b / calcium binding protein 5b / CABP5* / Q9JLK3* / Q9NP86* / calcium binding protein 5*ENSDARG0000002848534
cabp1a / calcium binding protein 1a / CABP1* / Q9JLK7* / Q9NZU7* / calcium binding protein 1*ENSDARG0000001999034
calml4a / calmodulin-like 4a / CALML4* / Q91WQ9* / Q96GE6* / calmodulin like 4* / Calmodulin-like protein 4 *ENSDARG0000007580032
calml4b / calmodulin-like 4bENSDARG0000005934725


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003009 skeletal muscle contraction IBA
 biological_processGO:0006937 regulation of muscle contraction IBA
 biological_processGO:0014823 response to activity IDA
 cellular_componentGO:0005861 troponin complex IBA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0048306 calcium-dependent protein binding IBA
 molecular_functionGO:0051015 actin filament binding IBA


Pathways (from Reactome)
Pathway description
Striated Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000037954 tnnt1 / troponin T type 1 (skeletal, slow) / P13805* / O88346* / troponin T1, skeletal, slow* / troponin T1, slow skeletal type*  / complex
 ENSDARG00000052708 tnni1b / troponin I type 1b (skeletal, slow) / TNNI1* / P19237* / troponin I1, slow skeletal type*  / complex






 

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