Manteia

ENSDARG00000011400

Danio rerio

Features

Gene ID:	ENSDARG00000011400

Biological name :	tnnc1a

Synonyms :	tnnc1a / troponin C type 1a (slow)

Possible biological names infered from orthology :

Species:	Danio rerio

Chr. number:	23
Strand:	1
Band:
Gene start:	4890693
Gene end:	4895876

Corresponding Affymetrix probe sets:	Dr.25329.1.S1_at (Zebrafish Array) NM_181498_at (Zebrafish Genome Array with custom cdf files)

Cross references:	Ensembl peptide - ENSDARP00000025541 NCBI entrez gene - 353247 See in Manteia. RefSeq - NM_181498 RefSeq Peptide - NP_852475 swissprot - Q800V7 ZFIN ID - ZDB-GENE-030523-1 Ensembl - ENSDARG00000011400

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name

Species

No match

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
tnnc1b / troponin C type 1b (slow) / TNNC1* / P63316* / P19123* / troponin C1, slow skeletal and cardiac type* / Troponin C, slow skeletal and cardiac muscles *	ENSDARG00000037539	89
tnnc2 / troponin C type 2 (fast) / P20801* / P02585* / Troponin C, skeletal muscle * / troponin C2, fast skeletal type*	ENSDARG00000070835	61
si:rp71-17i16.4 / TNNC2* / P20801* / P02585* / Troponin C, skeletal muscle * / troponin C2, fast skeletal type*	ENSDARG00000095002	60
calm2a / calm2b / calm3a / Q6PI52 / calmodulin 2a (phosphorylase kinase, delta)	ENSDARG00000100825	48
calm1b / calm2a / calm2b / Q6PI52 / calm3a / calmodulin 1b / Calm3* / CALM1* / P0DP27* / P0DP28* / P0DP26* / P0DP23* / calmodulin 1*	ENSDARG00000034187	48
calm2a / calm2b / calm3a / Q6PI52 / calmodulin 2b, (phosphorylase kinase, delta)	ENSDARG00000031427	48
calm2a / calm2b / calm1a / calm3a / Q6PI52 / calmodulin 1a	ENSDARG00000021811	48
calm2b / calm3a / calm2a / calm3b / Q6PI52 / calmodulin 2a (phosphorylase kinase, delta)	ENSDARG00000074057	48
calm2a / calm2b / calm3a / Q6PI52 / calmodulin 3a (phosphorylase kinase, delta)	ENSDARG00000015050	47
cabp2a / calcium binding protein 2a / CABP2* / Q9NPB3* / calcium binding protein 2*	ENSDARG00000052016	37
cabp5b / calcium binding protein 5b / CABP5* / Q9JLK3* / Q9NP86* / calcium binding protein 5*	ENSDARG00000028485	35
cabp5a / calcium binding protein 5a / CABP5* / Q9JLK3* / Q9NP86* / calcium binding protein 5*	ENSDARG00000002576	34
cabp1a / calcium binding protein 1a / CABP1* / Q9JLK7* / Q9NZU7* / calcium binding protein 1*	ENSDARG00000019990	34
cabp1b / calcium binding protein 1b / CABP1* / Q9JLK7* / Q9NZU7* / calcium binding protein 1*	ENSDARG00000033411	34
cabp2b / calcium binding protein 2b / CABP2* / Q9NPB3* / calcium binding protein 2*	ENSDARG00000052277	32
cabp4 / calcium binding protein 4 / P57796* / Q8VHC5*	ENSDARG00000008866	32
calml4a / calmodulin-like 4a / CALML4* / Q91WQ9* / Q96GE6* / calmodulin like 4* / Calmodulin-like protein 4 *	ENSDARG00000075800	32
si:cabz01076231.1 / CABP4* / P57796* / Q8VHC5* / calcium binding protein 4*	ENSDARG00000105631	30
calml4b / calmodulin-like 4b	ENSDARG00000059347	25

Protein motifs (from Interpro)

Interpro ID	Name
IPR002048	EF-hand domain
IPR011992	EF-hand domain pair
IPR018247	EF-Hand 1, calcium-binding site

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0003009	skeletal muscle contraction	IBA
biological_process	GO:0003231	cardiac ventricle development	IMP
biological_process	GO:0006937	regulation of muscle contraction	IBA
biological_process	GO:0014823	response to activity	IDA
biological_process	GO:0060048	cardiac muscle contraction	IMP
cellular_component	GO:0005861	troponin complex	IBA
molecular_function	GO:0005509	calcium ion binding	ISS
molecular_function	GO:0048306	calcium-dependent protein binding	IBA
molecular_function	GO:0051015	actin filament binding	IBA

Pathways (from Reactome)

Pathway description

No match

Phenotype (from MGI, Zfin or HPO)

ID	Phenotype	Definition	Genetic BG
ZFA:0000009	cardiac ventricle	cardiac ventricle shape , abnormal cardiac ventricle decreased size , abnormal cardiac ventricle non-contractile , abnormal	Show
ZFA:0000054	pericardium	pericardium edematous , abnormal	Show
ZFA:0000114	heart	heart quality , abnormal	Show
ZFA:0000471	atrium	atrium decreased size , abnormal atrium increased size , abnormal	Show
ZFA:0005061	ventricular myocardium	ventricular myocardium sarcomere disorganized , abnormal ventricular myocardium sarcomere sparse , abnormal	Show
ZFA:0009316	cardiac muscle cell	cardiac muscle cell myofibril disorganized , abnormal	Show

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

External programs and data are copyrighted by and are the property of their respective authors. The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation
		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr