ENSDARG00000029248


Danio rerio

Features
Gene ID: ENSDARG00000029248
  
Biological name :fubp1
  
Synonyms : far upstream element (FUSE) binding protein 1 / fubp1
  
Possible biological names infered from orthology : far upstream element binding protein 1 / Mus musculus far upstream element (FUSE) binding protein 1 (Fubp1), transcript variant 7, mRNA. / Q91WJ8 / Q96AE4
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 8649293
Gene end: 8663104
  
Corresponding Affymetrix probe sets: Dr.25771.1.S1_at (Zebrafish Array)   Dr.25771.1.S1_x_at (Zebrafish Array)   Dr.26505.1.A1_at (Zebrafish Array)   Dr.26505.2.S1_at (Zebrafish Array)   Dr.4133.1.A1_at (Zebrafish Array)   Dr.4133.2.S1_at (Zebrafish Array)   NM_213144_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000075883
Ensembl peptide - ENSDARP00000150517
NCBI entrez gene - 406418     See in Manteia.
RefSeq - XM_009297509
RefSeq - NM_213144
RefSeq - XM_009297503
RefSeq - XM_009297500
RefSeq Peptide - NP_998309
swissprot - Q6P2A9
ZFIN ID - ZDB-GENE-040426-2159
Ensembl - ENSDARG00000029248
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FUBP1ENSGALG00000008939Gallus gallus
 FUBP1ENSG00000162613Homo sapiens
 Fubp1ENSMUSG00000028034Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
khsrp / KH-type splicing regulatory protein / Q3U0V1* / Q92945*ENSDARG0000002648957
fubp3 / far upstream element (FUSE) binding protein 3 / Q96I24* / far upstream element binding protein 3*ENSDARG0000008689645


Protein motifs (from Interpro)
Interpro ID Name
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR015096  Far upstream element-binding protein, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0010468 regulation of gene expression IGI
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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