ENSDARG00000086896


Danio rerio

Features
Gene ID: ENSDARG00000086896
  
Biological name :fubp3
  
Synonyms : far upstream element (FUSE) binding protein 3 / fubp3
  
Possible biological names infered from orthology : far upstream element binding protein 3 / Q96I24
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 872299
Gene end: 927772
  
Corresponding Affymetrix probe sets: Dr.4559.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000111831
swissprot - E7EYA8
ZFIN ID - ZDB-GENE-041121-12
Ensembl - ENSDARG00000086896
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FUBP3ENSGALG00000003941Gallus gallus
 FUBP3ENSG00000107164Homo sapiens
 Fubp3ENSMUSG00000026843Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
fubp1 / far upstream element (FUSE) binding protein 1 / Q91WJ8* / Q96AE4* / far upstream element binding protein 1* / Mus musculus far upstream element (FUSE) binding protein 1 (Fubp1), tra...ENSDARG0000002924850
khsrp / KH-type splicing regulatory protein / Q3U0V1* / Q92945*ENSDARG0000002648949


Protein motifs (from Interpro)
Interpro ID Name
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR015096  Far upstream element-binding protein, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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