ENSDARG00000029252


Danio rerio

Features
Gene ID: ENSDARG00000029252
  
Biological name :ssb
  
Synonyms : Sjogren syndrome antigen B (autoantigen La) / ssb
  
Possible biological names infered from orthology : P05455 / P32067 / Sjogren syndrome antigen B
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 3716666
Gene end: 3728694
  
Corresponding Affymetrix probe sets: Dr.3463.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000041626
Ensembl peptide - ENSDARP00000151284
NCBI entrez gene - 321504     See in Manteia.
swissprot - F6NWT8
swissprot - Q7ZTI0
ZFIN ID - ZDB-GENE-030131-223
Ensembl - ENSDARG00000029252
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SSBENSGALG00000009677Gallus gallus
 SSBENSG00000138385Homo sapiens
 SsbENSMUSG00000068882Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR002344  Lupus La protein
 IPR006630  La-type HTH domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR014886  La protein, RNA-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr