ENSGALG00000009677


Gallus gallus

Features
Gene ID: ENSGALG00000009677
  
Biological name :SSB
  
Synonyms : lupus La protein isoform 1 / SSB
  
Possible biological names infered from orthology : P05455 / P32067 / Sjogren syndrome antigen B
  
Species: Gallus gallus
  
Chr. number: 7
Strand: -1
Band:
Gene start: 18671815
Gene end: 18679877
  
Corresponding Affymetrix probe sets: Gga.1146.1.S1_s_at (Chicken Array)   Gga.1146.2.S1_at (Chicken Array)   GgaAffx.12116.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000015735
Ensembl peptide - ENSGALP00000062135
NCBI entrez gene - 395268     See in Manteia.
RefSeq - XM_015289615
RefSeq - NM_001193669
RefSeq Peptide - NP_001180598
swissprot - Q8QHI5
swissprot - F6R1X6
Ensembl - ENSGALG00000009677
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ssbENSDARG00000029252Danio rerio
 SSBENSG00000138385Homo sapiens
 SsbENSMUSG00000068882Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR002344  Lupus La protein
 IPR006630  La-type HTH domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR014886  La protein, RNA-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr