ENSG00000138385


Homo sapiens

Features
Gene ID: ENSG00000138385
  
Biological name :SSB
  
Synonyms : P05455 / Sjogren syndrome antigen B / SSB
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q31.1
Gene start: 169791933
Gene end: 169812064
  
Corresponding Affymetrix probe sets: 201138_s_at (Human Genome U133 Plus 2.0 Array)   201139_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000386636
Ensembl peptide - ENSP00000397029
Ensembl peptide - ENSP00000396890
Ensembl peptide - ENSP00000395758
Ensembl peptide - ENSP00000260956
NCBI entrez gene - 6741     See in Manteia.
OMIM - 109090
RefSeq - NM_003142
RefSeq - NM_001294145
RefSeq Peptide - NP_001281074
RefSeq Peptide - NP_003133
swissprot - P05455
swissprot - E9PFL9
swissprot - E7ERC4
swissprot - E9PGX9
Ensembl - ENSG00000138385
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ssbENSDARG00000029252Danio rerio
 SSBENSGALG00000009677Gallus gallus
 SsbENSMUSG00000068882Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR002344  Lupus La protein
 IPR006630  La-type HTH domain
 IPR014886  La protein, RNA-binding domain
 IPR035979  RNA-binding domain superfamily
 IPR036388  Winged helix-like DNA-binding domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001682 tRNA 5"-leader removal IGI
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006400 tRNA modification TAS
 biological_processGO:0006409 tRNA export from nucleus IMP
 biological_processGO:0008033 tRNA processing IMP
 biological_processGO:0008334 histone mRNA metabolic process TAS
 biological_processGO:0042780 tRNA 3"-end processing IGI
 biological_processGO:0071045 nuclear histone mRNA catabolic process IMP
 biological_processGO:0075522 IRES-dependent viral translational initiation IDA
 biological_processGO:1903608 protein localization to cytoplasmic stress granule IDA
 cellular_componentGO:0000784 nuclear chromosome, telomeric region HDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IDA
 molecular_functionGO:0000049 tRNA binding IMP
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IMP
 molecular_functionGO:0003729 mRNA binding TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008266 poly(U) RNA binding IMP
 molecular_functionGO:1990825 sequence-specific mRNA binding IMP


Pathways (from Reactome)
Pathway description
RNA Polymerase III Transcription Termination
RNA Polymerase III Abortive And Retractive Initiation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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