ENSDARG00000029569


Danio rerio

Features
Gene ID: ENSDARG00000029569
  
Biological name :snapc1a
  
Synonyms : small nuclear RNA activating complex, polypeptide 1a / snapc1a
  
Possible biological names infered from orthology : AC124712.1 / Q16533 / Q8K0S9 / small nuclear RNA activating complex polypeptide 1 / SNAPC1 / snRNA-activating protein complex subunit 1
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 20314574
Gene end: 20324792
  
Corresponding Affymetrix probe sets: Dr.15445.1.S1_at (Zebrafish Array)   NM_200263_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000042375
Ensembl peptide - ENSDARP00000126716
NCBI entrez gene - 393233     See in Manteia.
RefSeq - NM_200263
RefSeq Peptide - NP_956557
swissprot - Q5TZD7
swissprot - R4GE05
ZFIN ID - ZDB-GENE-040426-1031
Ensembl - ENSDARG00000029569
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNAPC1ENSGALG00000011868Gallus gallus
 Q16533ENSG00000023608Homo sapiens
 AC124712.1ENSMUSG00000114046Mus musculus
 Q8K0S9ENSMUSG00000021113Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snapc1b / small nuclear RNA activating complex, polypeptide 1b / Q8K0S9* / Q16533* / SNAPC1* / AC124712.1* / snRNA-activating protein complex subunit 1 * / small nuclear RNA activating comp...ENSDARG0000000382734


Protein motifs (from Interpro)
Interpro ID Name
 IPR019188  Small nuclear RNA activating complex (SNAPc), subunit SNAP43


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0042795 snRNA transcription by RNA polymerase II IBA
 biological_processGO:0042796 snRNA transcription by RNA polymerase III IBA
 cellular_componentGO:0019185 snRNA-activating protein complex IBA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes
RNA Polymerase III Transcription Initiation From Type 3 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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