ENSG00000023608


Homo sapiens

Features
Gene ID: ENSG00000023608
  
Biological name :SNAPC1
  
Synonyms : Q16533 / small nuclear RNA activating complex polypeptide 1 / SNAPC1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: 1
Band: q23.2
Gene start: 61762357
Gene end: 61796428
  
Corresponding Affymetrix probe sets: 205443_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000216294
NCBI entrez gene - 6617     See in Manteia.
OMIM - 600591
RefSeq - NM_003082
RefSeq Peptide - NP_003073
swissprot - Q16533
Ensembl - ENSG00000023608
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snapc1aENSDARG00000029569Danio rerio
 snapc1bENSDARG00000003827Danio rerio
 SNAPC1ENSGALG00000011868Gallus gallus
 AC124712.1ENSMUSG00000114046Mus musculus
 Q8K0S9ENSMUSG00000021113Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019188  Small nuclear RNA activating complex (SNAPc), subunit SNAP43


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0042795 snRNA transcription by RNA polymerase II IBA
 biological_processGO:0042796 snRNA transcription by RNA polymerase III IBA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0019185 snRNA-activating protein complex IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes
RNA Polymerase III Abortive And Retractive Initiation
RNA Polymerase III Transcription Initiation From Type 3 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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