ENSMUSG00000021113


Mus musculus

Features
Gene ID: ENSMUSG00000021113
  
Biological name :Snapc1
  
Synonyms : Q8K0S9 / Snapc1 / snRNA-activating protein complex subunit 1
  
Possible biological names infered from orthology : Q16533 / small nuclear RNA activating complex polypeptide 1
  
Species: Mus musculus
  
Chr. number: 12
Strand: 1
Band: C3
Gene start: 73964481
Gene end: 73988966
  
Corresponding Affymetrix probe sets: 10396442 (MoGene1.0st)   1429335_at (Mouse Genome 430 2.0 Array)   1458400_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000021532
Ensembl peptide - ENSMUSP00000152587
Ensembl peptide - ENSMUSP00000152584
Ensembl peptide - ENSMUSP00000152248
Ensembl peptide - ENSMUSP00000152102
NCBI entrez gene - 75627     See in Manteia.
MGI - MGI:1922877
RefSeq - XM_006516336
RefSeq - NM_178392
RefSeq - XM_006516334
RefSeq - XM_006516335
RefSeq Peptide - NP_848479
swissprot - A0A1Y7VNS3
swissprot - Q8K0S9
swissprot - A0A1Y7VJQ2
swissprot - A0A1Y7VIR4
swissprot - A0A1Y7VL07
Ensembl - ENSMUSG00000021113
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snapc1aENSDARG00000029569Danio rerio
 snapc1bENSDARG00000003827Danio rerio
 SNAPC1ENSGALG00000011868Gallus gallus
 Q16533ENSG00000023608Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AC124712.1 / Q16533* / SNAPC1* / small nuclear RNA activating complex polypeptide 1*ENSMUSG0000011404626


Protein motifs (from Interpro)
Interpro ID Name
 IPR019188  Small nuclear RNA activating complex (SNAPc), subunit SNAP43


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0042795 snRNA transcription by RNA polymerase II IBA
 biological_processGO:0042796 snRNA transcription by RNA polymerase III IBA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005730 nucleolus ISO
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0019185 snRNA-activating protein complex IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes
RNA Polymerase III Transcription Initiation From Type 3 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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