ENSGALG00000011868


Gallus gallus

Features
Gene ID: ENSGALG00000011868
  
Biological name :SNAPC1
  
Synonyms : small nuclear RNA activating complex polypeptide 1 / SNAPC1
  
Possible biological names infered from orthology : AC124712.1 / Q16533 / Q8K0S9 / snRNA-activating protein complex subunit 1
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 54045921
Gene end: 54054066
  
Corresponding Affymetrix probe sets: Gga.7114.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000019336
NCBI entrez gene - 423517     See in Manteia.
RefSeq - XM_004936441
RefSeq - XM_421416
swissprot - F1NJK3
Ensembl - ENSGALG00000011868
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snapc1aENSDARG00000029569Danio rerio
 snapc1bENSDARG00000003827Danio rerio
 Q16533ENSG00000023608Homo sapiens
 AC124712.1ENSMUSG00000114046Mus musculus
 Q8K0S9ENSMUSG00000021113Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019188  Small nuclear RNA activating complex (SNAPc), subunit SNAP43


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0042795 snRNA transcription by RNA polymerase II IBA
 biological_processGO:0042796 snRNA transcription by RNA polymerase III IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0019185 snRNA-activating protein complex IBA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes
RNA Polymerase III Transcription Initiation From Type 3 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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