ENSDARG00000030213


Danio rerio

Features
Gene ID: ENSDARG00000030213
  
Biological name :sap30l
  
Synonyms : Q6NYV5 / sap30l / sap30-like
  
Possible biological names infered from orthology : Histone deacetylase complex subunit SAP30L / Q5SQF8 / Q9HAJ7
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 45875792
Gene end: 45878872
  
Corresponding Affymetrix probe sets: Dr.4041.1.A1_at (Zebrafish Array)   NM_214703_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000028875
NCBI entrez gene - 327079     See in Manteia.
RefSeq - NM_214703
RefSeq Peptide - NP_999868
swissprot - Q6NYV5
ZFIN ID - ZDB-GENE-030131-5287
Ensembl - ENSDARG00000030213
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SAP30LENSGALG00000028994Gallus gallus
 Q9HAJ7ENSG00000164576Homo sapiens
 Q5SQF8ENSMUSG00000020519Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR024145  Histone deacetylase complex subunit SAP30/SAP30-like
 IPR025717  Histone deacetylase complex subunit SAP30 zinc-finger
 IPR025718  Histone deacetylase complex subunit SAP30, Sin3 binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II ISS
 biological_processGO:0001947 heart looping IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IBA
 biological_processGO:0016575 histone deacetylation IEA
 cellular_componentGO:0000118 histone deacetylase complex IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus ISS
 molecular_functionGO:0003677 DNA binding ISS
 molecular_functionGO:0003712 transcription coregulator activity IBA
 molecular_functionGO:0004407 histone deacetylase activity IBA
 molecular_functionGO:0008270 zinc ion binding ISS
 molecular_functionGO:0008289 lipid binding IEA
 molecular_functionGO:0010314 phosphatidylinositol-5-phosphate binding ISS
 molecular_functionGO:0031491 nucleosome binding ISS
 molecular_functionGO:0032266 phosphatidylinositol-3-phosphate binding ISS
 molecular_functionGO:0042393 histone binding ISS
 molecular_functionGO:0044378 non-sequence-specific DNA binding, bending ISS
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0070273 phosphatidylinositol-4-phosphate binding ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000007 blood blood has fewer parts of type nucleate erythrocyte hemoglobin complex, abnormal
Show

 ZFA:0000114 heart heart morphology , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr