ENSMUSG00000020519


Mus musculus

Features
Gene ID: ENSMUSG00000020519
  
Biological name :Sap30l
  
Synonyms : Histone deacetylase complex subunit SAP30L / Q5SQF8 / Sap30l
  
Possible biological names infered from orthology : Q9HAJ7 / SAP30 like
  
Species: Mus musculus
  
Chr. number: 11
Strand: 1
Band: B1.3
Gene start: 57801637
Gene end: 57810217
  
Corresponding Affymetrix probe sets: 10376285 (MoGene1.0st)   10338763 (MoGene1.0st)   10339659 (MoGene1.0st)   10340684 (MoGene1.0st)   10340717 (MoGene1.0st)   10343769 (MoGene1.0st)   10343876 (MoGene1.0st)   1415718_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000020826
NCBI entrez gene - 50724     See in Manteia.
MGI - MGI:1354709
RefSeq - NM_001081168
RefSeq Peptide - NP_001074637
swissprot - Q5SQF8
Ensembl - ENSMUSG00000020519
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q6NYV5ENSDARG00000030213Danio rerio
 SAP30LENSGALG00000028994Gallus gallus
 Q9HAJ7ENSG00000164576Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Sap30 / O88574 / Histone deacetylase complex subunit SAP30 / O75446* / Sin3A associated protein 30*ENSMUSG0000003160968


Protein motifs (from Interpro)
Interpro ID Name
 IPR024145  Histone deacetylase complex subunit SAP30/SAP30-like
 IPR025717  Histone deacetylase complex subunit SAP30 zinc-finger
 IPR025718  Histone deacetylase complex subunit SAP30, Sin3 binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II ISS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0016575 histone deacetylation IEA
 cellular_componentGO:0000118 histone deacetylase complex ISO
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005730 nucleolus ISS
 molecular_functionGO:0003677 DNA binding ISO
 molecular_functionGO:0003712 transcription coregulator activity IBA
 molecular_functionGO:0004407 histone deacetylase activity IBA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0008289 lipid binding IEA
 molecular_functionGO:0010314 phosphatidylinositol-5-phosphate binding IEA
 molecular_functionGO:0031491 nucleosome binding IEA
 molecular_functionGO:0032266 phosphatidylinositol-3-phosphate binding ISS
 molecular_functionGO:0042393 histone binding IEA
 molecular_functionGO:0044378 non-sequence-specific DNA binding, bending IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0070273 phosphatidylinositol-4-phosphate binding ISS


Pathways (from Reactome)
Pathway description
HDACs deacetylate histones


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000048118 Arid4a / AT rich interactive domain 4A (RBP1-like) / P29374* / AT-rich interaction domain 4A*  / complex
 ENSMUSG00000080268 Brms1 / Q99N20 / Breast cancer metastasis-suppressor 1 homolog / Q9HCU9* / breast cancer metastasis suppressor 1*  / complex






 

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