ENSDARG00000030560


Danio rerio

Features
Gene ID: ENSDARG00000030560
  
Biological name :helz
  
Synonyms : helicase with zinc finger / helz
  
Possible biological names infered from orthology : P42694 / Probable helicase with zinc finger domain / Q6DFV5
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 60957512
Gene end: 61034549
  
Corresponding Affymetrix probe sets: Dr.22189.1.A1_at (Zebrafish Array)   NM_213266_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000042673
Ensembl peptide - ENSDARP00000044095
NCBI entrez gene - 406550     See in Manteia.
RefSeq - XM_021470068
RefSeq - NM_213266
RefSeq Peptide - NP_998431
swissprot - F1QNJ7
swissprot - A0A0A0MPG4
ZFIN ID - ZDB-GENE-040426-2419
Ensembl - ENSDARG00000030560
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HELZENSGALG00000027152Gallus gallus
 HELZENSG00000198265Homo sapiens
 HelzENSMUSG00000020721Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
helz2 / helicase with zinc finger 2, transcriptional coactivatorENSDARG0000001652721
si:dkey-97a13.6ENSDARG0000001260013
mov10a / Mov10 RISC complex RNA helicase a / MOV10* / Q9HCE1* / Mov10 RISC complex RNA helicase*ENSDARG0000001582911
Q1LXK4 / mov10b.1 / Moloney leukemia virus 10b, tandem duplicate 1 / MOV10* / Q9HCE1* / P23249* / Putative helicase MOV-10 * / Mov10 RISC complex RNA helicase*ENSDARG0000006117711
upf1 / upf1 regulator of nonsense transcripts homolog (yeast) / Q92900* / Q9EPU0* / UPF1, RNA helicase and ATPase*ENSDARG0000001630210
Q1LXK5 / mov10b.2 / Moloney leukemia virus 10b, tandem duplicate 2 / MOV10* / Q9HCE1* / P23249* / Putative helicase MOV-10 * / Mov10 RISC complex RNA helicase*ENSDARG0000005606510
AL935128.1 / HELZ2* / E9QAM5* / Q9BYK8* / helicase with zinc finger 2* / Helicase with zinc finger domain 2 *ENSDARG000000124465


Protein motifs (from Interpro)
Interpro ID Name
 IPR000571  Zinc finger, CCCH-type
 IPR011539  Rel homology domain (RHD), DNA-binding domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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