ENSDARG00000030775


Danio rerio

Features
Gene ID: ENSDARG00000030775
  
Biological name :sybl1
  
Synonyms : sybl1 / synaptobrevin-like 1
  
Possible biological names infered from orthology : P51809 / VAMP7 / vesicle associated membrane protein 7
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 9033315
Gene end: 9056067
  
Corresponding Affymetrix probe sets: Dr.15571.1.S1_at (Zebrafish Array)   NM_200266_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000041098
Ensembl peptide - ENSDARP00000120756
Ensembl peptide - ENSDARP00000116217
NCBI entrez gene - 393236     See in Manteia.
RefSeq - NM_200266
RefSeq Peptide - NP_956560
swissprot - E9QIZ6
swissprot - E9QC42
swissprot - Q7ZUI1
ZFIN ID - ZDB-GENE-040426-1055
Ensembl - ENSDARG00000030775
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VAMP7ENSGALG00000007476Gallus gallus
 VAMP7ENSG00000124333Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001388  Synaptobrevin
 IPR010908  Longin domain
 IPR011012  Longin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006887 exocytosis IBA
 biological_processGO:0006897 endocytosis IBA
 biological_processGO:0006906 vesicle fusion IBA
 biological_processGO:0008333 endosome to lysosome transport IBA
 biological_processGO:0016192 vesicle-mediated transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031201 SNARE complex IBA
 molecular_functionGO:0000149 SNARE binding IBA
 molecular_functionGO:0005484 SNAP receptor activity IBA


Pathways (from Reactome)
Pathway description
Clathrin derived vesicle budding
Lysosome Vesicle Biogenesis
Golgi Associated Vesicle Biogenesis
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000052518 stx4 / syntaxin 4 / Stx4a* / P70452* / Q12846*  / complex / reaction
 ENSDARG00000019526 agfg1b / ArfGAP with FG repeats 1b / AGFG1* / P52594* / Q8K2K6* / ArfGAP with FG repeats 1* / Arf-GAP domain and FG repeat-containing protein 1 *  / reaction / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr