ENSG00000124333


Homo sapiens

Features
Gene ID: ENSG00000124333
  
Biological name :VAMP7
  
Synonyms : P51809 / VAMP7 / vesicle associated membrane protein 7
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: 1
Band: q28
Gene start: 155881293
Gene end: 155943769
  
Corresponding Affymetrix probe sets: 202829_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000286448
Ensembl peptide - ENSP00000430039
Ensembl peptide - ENSP00000427822
Ensembl peptide - ENSP00000262640
NCBI entrez gene - 6845     See in Manteia.
OMIM - 300053
RefSeq - XM_017030063
RefSeq - NM_001145149
RefSeq - NM_001185183
RefSeq - NM_005638
RefSeq - XM_011531188
RefSeq - XM_011545653
RefSeq - XM_017029760
RefSeq Peptide - NP_005629
RefSeq Peptide - NP_001172112
RefSeq Peptide - NP_001138621
swissprot - A0A024R061
swissprot - P51809
swissprot - E5RH06
swissprot - A0A024R074
Ensembl - ENSG00000124333
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sybl1ENSDARG00000030775Danio rerio
 VAMP7ENSGALG00000007476Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001388  Synaptobrevin
 IPR010908  Longin domain
 IPR011012  Longin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006887 exocytosis IEA
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport ISS
 biological_processGO:0006892 post-Golgi vesicle-mediated transport TAS
 biological_processGO:0006897 endocytosis IBA
 biological_processGO:0006906 vesicle fusion IDA
 biological_processGO:0006911 phagocytosis, engulfment ISS
 biological_processGO:0008333 endosome to lysosome transport IDA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IDA
 biological_processGO:0017156 calcium ion regulated exocytosis ISS
 biological_processGO:0034197 triglyceride transport IEA
 biological_processGO:0035493 SNARE complex assembly IEA
 biological_processGO:0043001 Golgi to plasma membrane protein transport IEA
 biological_processGO:0043308 eosinophil degranulation ISS
 biological_processGO:0043312 neutrophil degranulation ISS
 biological_processGO:0043320 natural killer cell degranulation IMP
 biological_processGO:0047496 vesicle transport along microtubule IEA
 biological_processGO:0048280 vesicle fusion with Golgi apparatus IEA
 biological_processGO:0050775 positive regulation of dendrite morphogenesis IEA
 biological_processGO:0061024 membrane organization TAS
 biological_processGO:1900483 regulation of protein targeting to vacuolar membrane IEA
 biological_processGO:1903595 positive regulation of histamine secretion by mast cell IMP
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005765 lysosomal membrane TAS
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane ISS
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005802 trans-Golgi network IDA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0008021 synaptic vesicle IEA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030027 lamellipodium IDA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030133 transport vesicle IEA
 cellular_componentGO:0030141 secretory granule IDA
 cellular_componentGO:0030285 integral component of synaptic vesicle membrane IEA
 cellular_componentGO:0030658 transport vesicle membrane IEA
 cellular_componentGO:0030665 clathrin-coated vesicle membrane TAS
 cellular_componentGO:0030667 secretory granule membrane IDA
 cellular_componentGO:0030670 phagocytic vesicle membrane IEA
 cellular_componentGO:0031091 platelet alpha granule IDA
 cellular_componentGO:0031143 pseudopodium IDA
 cellular_componentGO:0031201 SNARE complex ISS
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0031902 late endosome membrane ISS
 cellular_componentGO:0035577 azurophil granule membrane IDA
 cellular_componentGO:0043005 neuron projection ISS
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 cellular_componentGO:0045177 apical part of cell IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0045335 phagocytic vesicle ISS
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0000149 SNARE binding IBA
 molecular_functionGO:0005484 SNAP receptor activity IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019905 syntaxin binding IEA


Pathways (from Reactome)
Pathway description
Clathrin derived vesicle budding
Lysosome Vesicle Biogenesis
Golgi Associated Vesicle Biogenesis
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis
Interleukin-12 signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000027 Azoospermia 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000030 Gonadoblastoma, male 
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 HP:0000045 Abnormality of the scrotum 
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000054 Micropenis 
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 HP:0000058 Abnormality of the labia 
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 HP:0000062 Ambiguous genitalia 
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 HP:0000100 Nephrotic syndrome 
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 HP:0000133 Gonadal dysgenesis 
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 HP:0000149 Gonadoblastoma, female 
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 HP:0000771 Gynecomastia 
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 HP:0000786 Primary amenorrhea 
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 HP:0000815 Hypergonadotropic hypogonadism "Reduced function of the gonads (testes in males or ovaries in females) associated with excess pituitary gonadotropin secretion and resulting in delayed sexual development and growth delay." [HPO:curators]
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 HP:0000823 Delayed puberty 
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 HP:0000846 Adrenal insufficiency 
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 HP:0000868 Decreased fertility in females 
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0002215 Sparse axillary hair 
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 HP:0002225 Sparse pubic hair 
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 HP:0002667 Nephroblastoma (Wilms tumor) "A kind of renal tumor primarily affecting children. It is characterized by an abnormal proliferation of the metanephric blastema cells, which are believed to be primitive embryologic cells of the kidney. Clinically, nephroblatoma usually presents as an abdominal mass, and in some cases with abdominal pain, hypertension, hematuria, and fever." [HPO:curators]
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0003251 Male infertility 
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 HP:0008187 Absence of secondary sex characteristics 
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 HP:0008193 Primary gonadal insufficiency 
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 HP:0008214 Decreased serum estradiol 
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 HP:0008230 Decreased testosterone in males 
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 HP:0008232 Elevated follicle stimulating hormone 
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 HP:0008665 Hypertrophic clitoris 
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 HP:0008726 Hypoplastic vagina "Underdevelopment of the vagina." [HPO:curators]
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 HP:0008730 Female external genitalia in males "The presence of female external genitalia in a person with a male karyotype." [HPO:curators]
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 HP:0008734 Decreased testicular size 
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 HP:0010464 Streak ovary "A developmental disorder characterized by the progressive loss of primordial germ cells in the developing ovaries of an embryo, leading to hypoplastic ovaries composed of wavy connective tissue with occasional clumps of granulosa cells, and frequenty mesonephric or hilar cells." [HPO:curators]
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 HP:0011969 Elevated luteinizing hormone "An elevated concentration of luteinizing hormone in the blood." [HPO:probinson]
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 HP:0012244 Abnormal sex determination "Anomaly of primary or secondary sexual development or characteristics." [HPO:probinson, MP:0002210]
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 HP:0012870 Vanishing testis "A condition which is considered to be due to the subsequent atrophy and disappearance in fetal life of an initially normal testis. In the presence of spermatic cord structures is evidence of the presence of the testis in early intrauterine life. When associated with a blind-ending spermatic cord, this entity is named as his absence of a testis in an otherwise normal 46XY male is usually unilateral and is assumed to be a consequence of intrauterine or perinatal torsion or infarction." [HPO:probinson, pmid:22985611]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0100779 Urogenital sinus anomaly "A rare birth defect in women where the urethra and vagina both open into a common channel." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000092531 O00161 / SNAP23 / synaptosome associated protein 23  / reaction / complex
 ENSG00000173744 AGFG1 / P52594 / ArfGAP with FG repeats 1  / complex / reaction
 ENSG00000103496 STX4 / Q12846 / syntaxin 4  / complex / reaction






 

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