ENSDARG00000031346


Danio rerio

Features
Gene ID: ENSDARG00000031346
  
Biological name :rbm17
  
Synonyms : rbm17 / RNA binding motif protein 17
  
Possible biological names infered from orthology : Q8JZX4 / Q96I25 / Splicing factor 45
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 25497104
Gene end: 25515591
  
Corresponding Affymetrix probe sets: Dr.11448.1.S1_at (Zebrafish Array)   NM_200915_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000044042
Ensembl peptide - ENSDARP00000118863
Ensembl peptide - ENSDARP00000153954
NCBI entrez gene - 393889     See in Manteia.
RefSeq - XM_005164814
RefSeq - NM_200915
RefSeq Peptide - NP_957209
swissprot - Q7ZVN6
swissprot - Q1LVD1
ZFIN ID - ZDB-GENE-040426-817
Ensembl - ENSDARG00000031346
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBM17ENSGALG00000006332Gallus gallus
 RBM17ENSG00000134453Homo sapiens
 Rbm17ENSMUSG00000037197Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000467  G-patch domain
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR016967  Splicing factor, SPF45
 IPR034653  SPF45, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0043484 regulation of RNA splicing IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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