ENSMUSG00000037197


Mus musculus

Features
Gene ID: ENSMUSG00000037197
  
Biological name :Rbm17
  
Synonyms : Q8JZX4 / Rbm17 / Splicing factor 45
  
Possible biological names infered from orthology : Q96I25 / RNA binding motif protein 17
  
Species: Mus musculus
  
Chr. number: 2
Strand: -1
Band: A1
Gene start: 11585437
Gene end: 11604153
  
Corresponding Affymetrix probe sets: 10480057 (MoGene1.0st)   1445745_at (Mouse Genome 430 2.0 Array)   1452691_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000117133
Ensembl peptide - ENSMUSP00000041831
NCBI entrez gene - 76938     See in Manteia.
MGI - MGI:1924188
RefSeq - NM_152824
RefSeq Peptide - NP_690037
swissprot - A2AP40
swissprot - Q8JZX4
Ensembl - ENSMUSG00000037197
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbm17ENSDARG00000031346Danio rerio
 RBM17ENSGALG00000006332Gallus gallus
 RBM17ENSG00000134453Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000467  G-patch domain
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR016967  Splicing factor, SPF45
 IPR034653  SPF45, RNA recognition motif
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000375 RNA splicing, via transesterification reactions TAS
 biological_processGO:0000380 alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0043484 regulation of RNA splicing IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr