ENSGALG00000006332


Gallus gallus

Features
Gene ID: ENSGALG00000006332
  
Biological name :RBM17
  
Synonyms : RBM17 / RNA binding motif protein 17
  
Possible biological names infered from orthology : Q8JZX4 / Q96I25 / Splicing factor 45
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 3516514
Gene end: 3529166
  
Corresponding Affymetrix probe sets: Gga.12459.1.S1_at (Chicken Array)   Gga.12459.1.S1_s_at (Chicken Array)   Gga.15031.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000010223
NCBI entrez gene - 418248     See in Manteia.
RefSeq - XM_004937469
RefSeq - XM_015291341
RefSeq - XM_015291502
RefSeq - XM_416473
RefSeq - XM_004937468
swissprot - E1BUJ1
Ensembl - ENSGALG00000006332
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbm17ENSDARG00000031346Danio rerio
 RBM17ENSG00000134453Homo sapiens
 Rbm17ENSMUSG00000037197Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000467  G-patch domain
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR016967  Splicing factor, SPF45


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000380 alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0043484 regulation of RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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